Variant report

Variant	rs11626809
Chromosome Location	chr14:68298812-68298813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68297953..68300289-chr14:68301292..68303564,3	MCF-7	breast:
2	chr14:68296992..68299258-chr14:68326743..68328477,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1033686	1.00[ASW][hapmap];0.93[GIH][hapmap];0.81[EUR][1000 genomes]
rs1040598	0.85[GIH][hapmap]
rs11621682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12878157	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs12881114	1.00[ASW][hapmap]
rs12891164	0.85[GIH][hapmap]
rs1543391	0.89[GIH][hapmap]
rs17192558	0.93[GIH][hapmap]
rs17192586	0.93[GIH][hapmap]
rs1810523	0.85[GIH][hapmap]
rs181564	0.83[GIH][hapmap]
rs181565	0.89[GIH][hapmap]
rs181570	0.89[GIH][hapmap]
rs1950764	1.00[ASW][hapmap];0.89[GIH][hapmap]
rs2235967	0.85[GIH][hapmap]
rs2295107	0.85[GIH][hapmap]
rs2874132	0.85[GIH][hapmap]
rs34612763	1.00[AFR][1000 genomes]
rs7143496	0.85[GIH][hapmap]
rs7149482	0.89[GIH][hapmap]
rs72725106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72725112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7410	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287200-68303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:68287400-68304800	Weak transcription	Lung	lung
3	chr14:68287400-68312800	Weak transcription	Aorta	Aorta
4	chr14:68287400-68312800	Weak transcription	Esophagus	oesophagus
5	chr14:68287400-68315200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:68287600-68301400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:68287600-68302800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:68287600-68303600	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:68287600-68303800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:68287600-68304800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:68287600-68306000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
13	chr14:68287800-68300600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:68287800-68304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:68287800-68305000	Weak transcription	Fetal Kidney	kidney
16	chr14:68287800-68306400	Weak transcription	Fetal Lung	lung
17	chr14:68287800-68310600	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:68288000-68300200	Weak transcription	NHEK	skin
20	chr14:68288000-68306400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:68288000-68306400	Weak transcription	HepG2	liver
22	chr14:68288000-68306800	Weak transcription	A549	lung
23	chr14:68288200-68302400	Weak transcription	GM12878-XiMat	blood
24	chr14:68288200-68304000	Weak transcription	K562	blood
25	chr14:68288200-68306200	Weak transcription	NHDF-Ad	bronchial
26	chr14:68288400-68303800	Weak transcription	Liver	Liver
27	chr14:68289600-68304800	Weak transcription	Fetal Intestine Large	intestine
28	chr14:68291400-68312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:68291600-68303200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:68292200-68300400	Weak transcription	Left Ventricle	heart
31	chr14:68293800-68300200	Weak transcription	Primary B cells from cord blood	blood
32	chr14:68293800-68301800	Weak transcription	Fetal Intestine Small	intestine
33	chr14:68293800-68302400	Weak transcription	Thymus	Thymus
34	chr14:68294000-68303000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr14:68294200-68300400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:68294200-68304600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:68294200-68315000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr14:68294200-68316600	Weak transcription	Placenta	Placenta
39	chr14:68294400-68303200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr14:68294400-68304400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr14:68294400-68304600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:68294400-68306400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:68294400-68312400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr14:68294600-68300800	Weak transcription	Ovary	ovary
45	chr14:68294600-68302400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:68294600-68302400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr14:68294600-68302400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:68294600-68304200	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:68294600-68305400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:68294600-68312000	Weak transcription	Fetal Stomach	stomach

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