Variant report

Variant	rs1950764
Chromosome Location	chr14:68343363-68343364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1033686	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621638	1.00[CHB][hapmap]
rs11626809	1.00[ASW][hapmap];0.89[GIH][hapmap]
rs12432558	0.84[GIH][hapmap]
rs12878157	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs12881114	1.00[ASW][hapmap]
rs17192558	0.96[GIH][hapmap]
rs17192586	0.96[GIH][hapmap]
rs34050208	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34274745	1.00[ASN][1000 genomes]
rs72725119	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725138	0.82[AMR][1000 genomes]
rs7410	1.00[ASW][hapmap]
rs986383	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:68334200-68348200	Weak transcription	Lung	lung
5	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
6	chr14:68335200-68343400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:68335200-68348000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:68342400-68351800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:68342600-68347400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:68342600-68347600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:68342800-68348000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:68343000-68343800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr14:68343000-68343800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr14:68343200-68343600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr14:68343200-68343600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:68343200-68343800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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