Variant report

Variant	rs72727922
Chromosome Location	chr4:147046473-147046474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147032685..147035197-chr4:147045955..147048803,2	K562	blood:

Variant related genes	Relation type
ENSG00000248809	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10000407	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10519776	0.81[EUR][1000 genomes]
rs11100919	0.81[EUR][1000 genomes]
rs11721873	0.81[EUR][1000 genomes]
rs11723069	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11724307	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11725678	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728525	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11728609	0.81[EUR][1000 genomes]
rs11729787	0.81[EUR][1000 genomes]
rs11730306	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11733347	0.81[EUR][1000 genomes]
rs11940961	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152657	0.81[EUR][1000 genomes]
rs12152709	0.81[EUR][1000 genomes]
rs17021106	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17021186	0.80[AMR][1000 genomes]
rs17021217	0.81[EUR][1000 genomes]
rs17756056	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17756234	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17757522	0.83[EUR][1000 genomes]
rs17757685	0.81[EUR][1000 genomes]
rs17757715	0.81[EUR][1000 genomes]
rs17758092	0.81[EUR][1000 genomes]
rs17758396	0.80[EUR][1000 genomes]
rs17758420	0.81[EUR][1000 genomes]
rs17814023	0.81[EUR][1000 genomes]
rs17814065	0.81[EUR][1000 genomes]
rs17814503	0.81[EUR][1000 genomes]
rs17814598	0.81[EUR][1000 genomes]
rs1812385	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1864371	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2007366	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2068009	0.81[EUR][1000 genomes]
rs2115796	0.81[EUR][1000 genomes]
rs2115797	0.81[EUR][1000 genomes]
rs2163171	0.81[EUR][1000 genomes]
rs28393640	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28420466	0.80[AMR][1000 genomes]
rs3756082	0.81[EUR][1000 genomes]
rs3948408	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549398	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55736910	0.81[EUR][1000 genomes]
rs56174047	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56279747	0.81[EUR][1000 genomes]
rs56289966	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333123	0.81[EUR][1000 genomes]
rs62326764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62326797	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62326804	0.81[EUR][1000 genomes]
rs62326848	0.81[EUR][1000 genomes]
rs6537399	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537400	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537401	0.81[AMR][1000 genomes]
rs6816161	0.81[EUR][1000 genomes]
rs6821066	0.81[EUR][1000 genomes]
rs6821479	0.81[EUR][1000 genomes]
rs6824313	0.81[EUR][1000 genomes]
rs6832576	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6838458	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6839123	0.81[EUR][1000 genomes]
rs6839141	0.81[EUR][1000 genomes]
rs6844381	0.81[EUR][1000 genomes]
rs6856647	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657269	0.83[EUR][1000 genomes]
rs7695415	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745	0.81[EUR][1000 genomes]
rs919482	0.80[AMR][1000 genomes]
rs919483	0.83[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs72727922	RP11-6L6.2	cis	Adipose Subcutaneous	GTEx
rs72727922	RP11-6L6.2	cis	Skin Sun Exposed Lower leg	GTEx
rs72727922	RP11-6L6.2	cis	Artery Tibial	GTEx
rs72727922	RP11-6L6.2	cis	Whole Blood	GTEx
rs72727922	RP11-6L6.2	cis	Nerve Tibial	GTEx
rs72727922	RP11-6L6.2	cis	lung	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147045200-147046600	Enhancers	Placenta	Placenta
2	chr4:147045800-147055400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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