Variant report

Variant	rs1864371
Chromosome Location	chr4:147039759-147039760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147032587..147035349-chr4:147037614..147039861,2	MCF-7	breast:
2	chr4:147033562..147035670-chr4:147039614..147042398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248809	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10000407	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10017509	0.92[CEU][hapmap]
rs10519776	0.81[EUR][1000 genomes]
rs11100919	0.81[EUR][1000 genomes]
rs11721873	0.81[EUR][1000 genomes]
rs11722991	0.92[CEU][hapmap]
rs11723069	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11724307	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725678	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11728525	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11728609	0.81[EUR][1000 genomes]
rs11729787	0.81[EUR][1000 genomes]
rs11730306	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11733347	0.81[EUR][1000 genomes]
rs11734320	0.92[CEU][hapmap]
rs11940961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12152657	0.81[EUR][1000 genomes]
rs12152709	0.81[EUR][1000 genomes]
rs12186313	0.92[CEU][hapmap]
rs17021106	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17021186	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs17021217	0.81[EUR][1000 genomes]
rs17756056	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17756234	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17757522	0.96[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs17757685	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs17757715	0.81[EUR][1000 genomes]
rs17758092	0.81[EUR][1000 genomes]
rs17758396	0.80[EUR][1000 genomes]
rs17758420	0.81[EUR][1000 genomes]
rs17814023	0.81[EUR][1000 genomes]
rs17814065	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs17814503	0.81[EUR][1000 genomes]
rs17814598	0.81[EUR][1000 genomes]
rs1812385	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1865531	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs2007366	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2068009	0.81[EUR][1000 genomes]
rs2115796	0.81[EUR][1000 genomes]
rs2115797	0.81[EUR][1000 genomes]
rs2163171	0.81[EUR][1000 genomes]
rs28393640	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3733461	0.92[CEU][hapmap]
rs3756081	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs3756082	0.81[EUR][1000 genomes]
rs3775498	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs3815967	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs3948408	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4549398	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4835030	0.80[CEU][hapmap]
rs4835283	0.92[CEU][hapmap]
rs4835284	0.92[CEU][hapmap]
rs4835286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55736910	0.81[EUR][1000 genomes]
rs56174047	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56279747	0.81[EUR][1000 genomes]
rs56289966	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56333123	0.81[EUR][1000 genomes]
rs62326764	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62326797	0.85[EUR][1000 genomes]
rs62326804	0.81[EUR][1000 genomes]
rs62326848	0.81[EUR][1000 genomes]
rs6537399	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6537400	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6815527	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs6816161	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs6820462	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs6821066	0.81[EUR][1000 genomes]
rs6821479	0.81[EUR][1000 genomes]
rs6824313	0.81[EUR][1000 genomes]
rs6832576	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6838174	0.81[CEU][hapmap]
rs6838458	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6839123	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs6839141	0.81[EUR][1000 genomes]
rs6844381	0.81[EUR][1000 genomes]
rs6856647	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72727922	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7657269	0.83[EUR][1000 genomes]
rs7695415	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7745	0.81[EUR][1000 genomes]
rs919482	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs919483	0.96[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs9308199	0.92[CEU][hapmap];0.82[CHB][hapmap]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1864371	RP11-6L6.2	cis	Adipose Subcutaneous	GTEx
rs1864371	RP11-6L6.2	cis	Artery Tibial	GTEx
rs1864371	RP11-6L6.2	cis	Skin Sun Exposed Lower leg	GTEx
rs1864371	RP11-6L6.2	cis	Esophagus Muscularis	GTEx
rs1864371	RP11-6L6.2	cis	Muscle Skeletal	GTEx
rs1864371	RP11-6L6.2	cis	Nerve Tibial	GTEx
rs1864371	RP11-6L6.2	cis	Whole Blood	GTEx
rs1864371	RP11-6L6.2	cis	lung	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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