Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147025879..147028617-chr4:147031114..147034513,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248809	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10017509	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10024190	1.00[ASN][1000 genomes]
rs11100916	1.00[ASN][1000 genomes]
rs11722991	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11731099	1.00[ASN][1000 genomes]
rs11733512	1.00[ASN][1000 genomes]
rs11734297	1.00[ASN][1000 genomes]
rs11734320	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11931374	0.83[ASN][1000 genomes]
rs11940961	0.80[CEU][hapmap]
rs12186313	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12331881	1.00[ASN][1000 genomes]
rs12331886	1.00[ASN][1000 genomes]
rs12332062	1.00[ASN][1000 genomes]
rs1864371	0.80[CEU][hapmap]
rs28691582	1.00[ASN][1000 genomes]
rs3733461	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4076765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835283	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs4835284	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4835286	0.80[CEU][hapmap]
rs72727909	1.00[ASN][1000 genomes]
rs731517	1.00[ASN][1000 genomes]
rs731518	0.90[ASN][1000 genomes]
rs731519	1.00[ASN][1000 genomes]
rs731520	1.00[ASN][1000 genomes]
rs9995546	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4835030	RP11-6L6.2	cis	Adipose Subcutaneous	GTEx
rs4835030	RP11-6L6.2	cis	Skin Sun Exposed Lower leg	GTEx
rs4835030	RP11-6L6.2	cis	lung	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147021200-147029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:147024600-147035000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:147026000-147028600	Enhancers	Fetal Intestine Small	intestine
4	chr4:147026400-147030800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:147027200-147028600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:147027200-147029400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:147027400-147029000	Weak transcription	Fetal Intestine Large	intestine
8	chr4:147027400-147029200	Weak transcription	Adipose Nuclei	Adipose
9	chr4:147027600-147029600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:147027800-147028600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr4:147028000-147031200	Weak transcription	GM12878-XiMat	blood
12	chr4:147028400-147028600	Enhancers	Placenta	Placenta

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