Variant report

Variant	rs4835283
Chromosome Location	chr4:147027229-147027230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147025879..147028617-chr4:147031114..147034513,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248809	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10017509	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024190	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100916	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722991	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733512	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734297	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734320	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931374	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11940961	0.92[CEU][hapmap]
rs12186313	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331881	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331886	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332062	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17021186	0.84[CEU][hapmap]
rs17756234	0.88[CEU][hapmap]
rs17757522	0.88[CEU][hapmap]
rs17757685	0.81[CEU][hapmap]
rs17814065	0.83[CEU][hapmap]
rs1864371	0.92[CEU][hapmap]
rs1865531	0.81[CEU][hapmap]
rs28691582	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733461	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775498	0.84[CEU][hapmap]
rs3815967	0.84[CEU][hapmap]
rs4076765	1.00[ASN][1000 genomes]
rs4835030	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs4835284	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835286	0.92[CEU][hapmap]
rs6815527	0.83[CEU][hapmap]
rs6816161	0.81[CEU][hapmap]
rs6820462	0.81[CEU][hapmap]
rs6839123	0.83[CEU][hapmap]
rs72727909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731517	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731518	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs731519	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731520	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919482	0.81[CEU][hapmap]
rs919483	0.88[CEU][hapmap]
rs9308199	0.84[CEU][hapmap]
rs9995546	0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4835283	RP11-6L6.2	cis	Skin Sun Exposed Lower leg	GTEx
rs4835283	RP11-6L6.2	cis	Adipose Subcutaneous	GTEx
rs4835283	RP11-6L6.2	cis	lung	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147021200-147029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:147024600-147035000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:147025400-147027400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr4:147025600-147027400	Enhancers	Adipose Nuclei	Adipose
5	chr4:147025800-147027400	Enhancers	Fetal Intestine Large	intestine
6	chr4:147025800-147027600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr4:147025800-147027600	Enhancers	Placenta	Placenta
8	chr4:147026000-147028600	Enhancers	Fetal Intestine Small	intestine
9	chr4:147026400-147030800	Weak transcription	Primary B cells from cord blood	blood
10	chr4:147027200-147028000	Enhancers	GM12878-XiMat	blood
11	chr4:147027200-147028600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:147027200-147029400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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