Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93688980..93691627-chr9:93693965..93698752,5	MCF-7	breast:
2	chr9:93698542..93700371-chr9:93703211..93706072,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1172988	1.00[ASN][1000 genomes]
rs1172989	1.00[ASN][1000 genomes]
rs11794023	1.00[ASN][1000 genomes]
rs12377938	1.00[ASN][1000 genomes]
rs1675317	1.00[ASN][1000 genomes]
rs209424	1.00[ASN][1000 genomes]
rs209971	1.00[ASN][1000 genomes]
rs290213	1.00[ASN][1000 genomes]
rs290244	1.00[ASN][1000 genomes]
rs290261	1.00[ASN][1000 genomes]
rs290262	1.00[ASN][1000 genomes]
rs290264	1.00[ASN][1000 genomes]
rs290272	1.00[ASN][1000 genomes]
rs290277	1.00[ASN][1000 genomes]
rs290983	1.00[ASN][1000 genomes]
rs291002	1.00[ASN][1000 genomes]
rs291004	1.00[ASN][1000 genomes]
rs291007	1.00[ASN][1000 genomes]
rs4744496	1.00[ASN][1000 genomes]
rs56049925	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731311	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93692800-93701600	Weak transcription	Fetal Brain Female	brain
2	chr9:93698000-93704200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:93698400-93699200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:93698400-93699400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:93698600-93699000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:93698600-93699200	Enhancers	Osteobl	bone
7	chr9:93698600-93699400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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