Variant report

Variant	rs11794023
Chromosome Location	chr9:93664706-93664707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93664277..93666990-chr9:93670141..93672637,4	K562	blood:
2	chr9:93663803..93666735-chr9:93669884..93671641,2	K562	blood:
3	chr17:66902550..66903211-chr9:93664461..93664962,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1172988	1.00[ASN][1000 genomes]
rs1172989	1.00[ASN][1000 genomes]
rs12377938	1.00[ASN][1000 genomes]
rs12551863	1.00[ASN][1000 genomes]
rs158508	1.00[CHB][hapmap]
rs1675317	1.00[ASN][1000 genomes]
rs1755958	1.00[CHB][hapmap]
rs1760124	1.00[CHB][hapmap]
rs2035072	1.00[CHB][hapmap]
rs209424	1.00[ASN][1000 genomes]
rs209971	1.00[ASN][1000 genomes]
rs2613310	1.00[CHB][hapmap]
rs2613320	1.00[CHB][hapmap]
rs290213	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs290225	1.00[CHB][hapmap]
rs290232	1.00[CHB][hapmap]
rs290234	1.00[CHB][hapmap]
rs290235	1.00[CHB][hapmap]
rs290236	1.00[CHB][hapmap]
rs290237	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs290238	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs290244	1.00[ASN][1000 genomes]
rs290256	1.00[CHB][hapmap]
rs290261	1.00[ASN][1000 genomes]
rs290262	1.00[ASN][1000 genomes]
rs290264	1.00[ASN][1000 genomes]
rs290272	1.00[ASN][1000 genomes]
rs290277	1.00[ASN][1000 genomes]
rs290983	1.00[ASN][1000 genomes]
rs291002	1.00[ASN][1000 genomes]
rs291004	1.00[ASN][1000 genomes]
rs291007	1.00[ASN][1000 genomes]
rs4744493	1.00[ASN][1000 genomes]
rs4744496	1.00[ASN][1000 genomes]
rs56049925	1.00[ASN][1000 genomes]
rs72731311	1.00[ASN][1000 genomes]
rs72731312	1.00[ASN][1000 genomes]
rs965892	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93634000-93666200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:93643000-93666600	Weak transcription	Stomach Mucosa	stomach
3	chr9:93643600-93665400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:93646200-93664800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:93647400-93666600	Strong transcription	Primary B cells from cord blood	blood
6	chr9:93647600-93664800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:93648200-93665000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:93652600-93667200	Weak transcription	Gastric	stomach
9	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:93660400-93671400	Weak transcription	GM12878-XiMat	blood
11	chr9:93660800-93665600	Weak transcription	Esophagus	oesophagus
12	chr9:93662000-93666400	Weak transcription	Fetal Kidney	kidney
13	chr9:93662000-93670400	Weak transcription	Fetal Lung	lung
14	chr9:93662000-93677000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:93662200-93667600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr9:93662400-93671200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr9:93663000-93666200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:93663200-93672200	Weak transcription	Spleen	Spleen
19	chr9:93663200-93673800	Weak transcription	Thymus	Thymus
20	chr9:93663400-93673600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr9:93664000-93664800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:93664000-93664800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:93664000-93664800	Strong transcription	Fetal Thymus	thymus
24	chr9:93664000-93665000	Strong transcription	Primary hematopoietic stem cells	blood
25	chr9:93664600-93667200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:93664600-93667200	Weak transcription	Pancreas	Pancrea

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