Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93484649..93486514-chr9:93487785..93489688,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1172988	1.00[ASN][1000 genomes]
rs1172989	1.00[ASN][1000 genomes]
rs11794023	1.00[ASN][1000 genomes]
rs12377938	1.00[ASN][1000 genomes]
rs158508	1.00[CHB][hapmap]
rs1675317	1.00[ASN][1000 genomes]
rs1755958	1.00[CHB][hapmap]
rs1760124	1.00[CHB][hapmap]
rs2035072	1.00[CHB][hapmap]
rs209424	1.00[ASN][1000 genomes]
rs209971	1.00[ASN][1000 genomes]
rs2613310	1.00[CHB][hapmap]
rs2613320	1.00[CHB][hapmap]
rs290213	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs290225	1.00[CHB][hapmap]
rs290232	1.00[CHB][hapmap]
rs290234	1.00[CHB][hapmap]
rs290235	1.00[CHB][hapmap]
rs290236	1.00[CHB][hapmap]
rs290237	1.00[CHB][hapmap]
rs290238	1.00[CHB][hapmap]
rs290244	1.00[ASN][1000 genomes]
rs290256	1.00[CHB][hapmap]
rs290261	1.00[ASN][1000 genomes]
rs290262	1.00[ASN][1000 genomes]
rs290264	1.00[ASN][1000 genomes]
rs290272	1.00[ASN][1000 genomes]
rs290277	1.00[ASN][1000 genomes]
rs290983	1.00[ASN][1000 genomes]
rs291002	1.00[ASN][1000 genomes]
rs291004	1.00[ASN][1000 genomes]
rs291007	1.00[ASN][1000 genomes]
rs4744493	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744496	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965892	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv482757	chr9:93356095-93543903	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93484600-93487400	Weak transcription	Thymus	Thymus
2	chr9:93484600-93489800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:93484800-93486800	Weak transcription	Fetal Thymus	thymus

Quick Search: