Variant report
| Variant | rs4744493 |
|---|---|
| Chromosome Location | chr9:93496128-93496129 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:93488890..93491318-chr9:93493066..93496177,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1172988 | 1.00[ASN][1000 genomes] |
| rs1172989 | 1.00[ASN][1000 genomes] |
| rs11794023 | 1.00[ASN][1000 genomes] |
| rs12377938 | 1.00[ASN][1000 genomes] |
| rs12551863 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675317 | 1.00[ASN][1000 genomes] |
| rs209424 | 1.00[ASN][1000 genomes] |
| rs209971 | 1.00[ASN][1000 genomes] |
| rs290213 | 1.00[ASN][1000 genomes] |
| rs290244 | 1.00[ASN][1000 genomes] |
| rs290261 | 1.00[ASN][1000 genomes] |
| rs290262 | 1.00[ASN][1000 genomes] |
| rs290264 | 1.00[ASN][1000 genomes] |
| rs290272 | 1.00[ASN][1000 genomes] |
| rs290277 | 1.00[ASN][1000 genomes] |
| rs290983 | 1.00[ASN][1000 genomes] |
| rs291002 | 1.00[ASN][1000 genomes] |
| rs291004 | 1.00[ASN][1000 genomes] |
| rs291007 | 1.00[ASN][1000 genomes] |
| rs4744496 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046989 | chr9:93353987-93800416 | Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv482757 | chr9:93356095-93543903 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv968727 | chr9:93494212-93514741 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv968728 | chr9:93494212-93532434 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:93490800-93499000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
