Variant report

Variant	rs7273139
Chromosome Location	chr20:24360631-24360632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11905097	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11905505	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11905822	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7266805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73610792	0.85[AFR][1000 genomes]
rs73610794	0.85[AFR][1000 genomes]
rs73610797	0.85[AFR][1000 genomes]
rs8114315	0.85[AFR][1000 genomes]
rs8124655	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8124757	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9753650	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24357800-24362800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr20:24358000-24362400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr20:24358000-24362800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr20:24359000-24363200	Enhancers	Brain Germinal Matrix	brain
5	chr20:24359400-24361600	Enhancers	Fetal Muscle Leg	muscle
6	chr20:24359800-24361000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr20:24359800-24363800	Enhancers	Brain Hippocampus Middle	brain
8	chr20:24359800-24364000	Enhancers	Brain Substantia Nigra	brain
9	chr20:24360000-24361200	Enhancers	Fetal Stomach	stomach
10	chr20:24360000-24361400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr20:24360000-24362000	Weak transcription	Fetal Brain Male	brain
12	chr20:24360200-24360800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr20:24360200-24360800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr20:24360200-24360800	Enhancers	Brain Anterior Caudate	brain
15	chr20:24360400-24361600	Enhancers	Brain Angular Gyrus	brain
16	chr20:24360400-24362000	Enhancers	Brain Cingulate Gyrus	brain
17	chr20:24360400-24363400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr20:24360400-24364000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr20:24360600-24360800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr20:24360600-24362600	Weak transcription	Colon Smooth Muscle	Colon
21	chr20:24360600-24363000	Weak transcription	Fetal Lung	lung
22	chr20:24360600-24363800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr20:24360600-24365200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr20:24360600-24370000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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