Variant report

Variant	rs73610792
Chromosome Location	chr20:24338253-24338254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11905822	0.85[AFR][1000 genomes]
rs6036747	0.82[ASN][1000 genomes]
rs6036748	0.82[ASN][1000 genomes]
rs6049623	0.80[ASN][1000 genomes]
rs7273139	0.85[AFR][1000 genomes]
rs73610791	1.00[ASN][1000 genomes]
rs73610793	0.96[ASN][1000 genomes]
rs73610794	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73610795	0.89[ASN][1000 genomes]
rs73610797	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73610798	0.89[ASN][1000 genomes]
rs8114315	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8121098	0.96[ASN][1000 genomes]
rs8124655	0.85[AFR][1000 genomes]
rs8124757	0.85[AFR][1000 genomes]
rs9679898	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24332000-24341800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24333400-24339400	Weak transcription	Brain Angular Gyrus	brain
3	chr20:24334000-24338400	Enhancers	Brain Hippocampus Middle	brain
4	chr20:24334600-24339800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr20:24337400-24338600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr20:24337600-24338400	Enhancers	Brain Substantia Nigra	brain
7	chr20:24337800-24338400	Enhancers	Fetal Muscle Leg	muscle
8	chr20:24337800-24339800	Weak transcription	Fetal Stomach	stomach
9	chr20:24338000-24340400	Weak transcription	Brain Germinal Matrix	brain
10	chr20:24338000-24340400	Enhancers	Fetal Kidney	kidney
11	chr20:24338200-24339600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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