Variant report

Variant	rs9679898
Chromosome Location	chr20:24336365-24336366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56296361	0.95[EUR][1000 genomes]
rs6036747	0.81[ASN][1000 genomes]
rs6036748	0.81[ASN][1000 genomes]
rs6114728	1.00[MEX][hapmap]
rs73101156	0.90[EUR][1000 genomes]
rs73101202	0.95[EUR][1000 genomes]
rs73109073	0.85[EUR][1000 genomes]
rs73610791	0.99[ASN][1000 genomes]
rs73610792	0.99[ASN][1000 genomes]
rs73610793	0.95[ASN][1000 genomes]
rs73610794	0.88[ASN][1000 genomes]
rs73610795	0.88[ASN][1000 genomes]
rs73610797	0.88[ASN][1000 genomes]
rs73610798	0.88[ASN][1000 genomes]
rs8114315	0.95[ASN][1000 genomes]
rs8121098	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24332000-24341800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24333200-24337000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr20:24333200-24337600	Weak transcription	Brain Substantia Nigra	brain
4	chr20:24333400-24339400	Weak transcription	Brain Angular Gyrus	brain
5	chr20:24334000-24338400	Enhancers	Brain Hippocampus Middle	brain
6	chr20:24334600-24339800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:24334800-24338000	Enhancers	Brain Germinal Matrix	brain
8	chr20:24335600-24336600	Enhancers	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links