Variant report

Variant	rs72731943
Chromosome Location	chr15:57426901-57426902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2951907	1.00[AFR][1000 genomes]
rs55893857	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55910715	1.00[AFR][1000 genomes]
rs72733918	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72733925	1.00[AFR][1000 genomes]
rs72733934	1.00[AFR][1000 genomes]
rs72733957	1.00[AFR][1000 genomes]
rs72751008	1.00[AFR][1000 genomes]
rs72751021	1.00[AFR][1000 genomes]
rs72751027	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57387000-57430000	Weak transcription	Placenta	Placenta
2	chr15:57387600-57442400	Weak transcription	Fetal Intestine Large	intestine
3	chr15:57410600-57440800	Weak transcription	Ovary	ovary
4	chr15:57411000-57428200	Weak transcription	NHLF	lung
5	chr15:57411000-57430400	Weak transcription	NH-A	brain
6	chr15:57413800-57428800	Weak transcription	Gastric	stomach
7	chr15:57415000-57427800	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:57415000-57428400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:57415000-57438800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr15:57415600-57438800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:57416000-57438800	Weak transcription	Primary B cells from cord blood	blood
12	chr15:57416800-57430800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:57419000-57427000	Weak transcription	A549	lung
14	chr15:57419000-57428400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:57419600-57439000	Weak transcription	Fetal Intestine Small	intestine
16	chr15:57420600-57428200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:57421800-57436600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:57422600-57430400	Weak transcription	Fetal Heart	heart
19	chr15:57423200-57428400	Enhancers	Primary T cells from cord blood	blood
20	chr15:57424200-57428400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:57424400-57428600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:57424600-57427400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:57424600-57428200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:57424600-57428200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr15:57424600-57428400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr15:57424800-57427400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:57424800-57427800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:57424800-57427800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr15:57424800-57427800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr15:57424800-57428400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr15:57425000-57427600	Enhancers	Dnd41	blood
32	chr15:57425000-57428200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:57425200-57427600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:57425200-57428000	Enhancers	NHDF-Ad	bronchial
35	chr15:57425200-57428400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr15:57425200-57428600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr15:57425400-57427200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:57425400-57427400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr15:57425400-57427400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr15:57425400-57428600	Enhancers	Fetal Kidney	kidney
41	chr15:57425600-57427000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:57425600-57432200	Enhancers	Fetal Lung	lung
43	chr15:57425800-57427200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:57425800-57427200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:57425800-57428000	Weak transcription	Osteobl	bone
46	chr15:57425800-57428400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:57425800-57428400	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:57425800-57428400	Weak transcription	Left Ventricle	heart
49	chr15:57425800-57429000	Enhancers	Brain Anterior Caudate	brain
50	chr15:57425800-57429000	Enhancers	Brain Germinal Matrix	brain

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