Variant report

Variant	rs72733918
Chromosome Location	chr15:57505135-57505136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57501438..57503633-chr15:57503718..57505515,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2951907	1.00[AFR][1000 genomes]
rs55893857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55910715	1.00[AFR][1000 genomes]
rs61998063	1.00[AFR][1000 genomes]
rs72731943	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72733925	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72733934	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72733957	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72751021	1.00[AFR][1000 genomes]
rs72751027	1.00[AFR][1000 genomes]
rs907477	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv457164	chr15:57495060-57559387	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv569578	chr15:57495060-57559387	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57444400-57507400	Weak transcription	K562	blood
2	chr15:57453800-57524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:57458200-57505200	Strong transcription	Fetal Thymus	thymus
4	chr15:57478800-57526200	Weak transcription	Hela-S3	cervix
5	chr15:57479400-57524800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:57481800-57524600	Weak transcription	Right Ventricle	heart
7	chr15:57485000-57506200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:57486800-57505800	Weak transcription	NHDF-Ad	bronchial
9	chr15:57487000-57524400	Weak transcription	Placenta	Placenta
10	chr15:57487200-57511200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:57488200-57511600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:57489200-57506000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:57489400-57506200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:57490600-57505800	Weak transcription	NH-A	brain
15	chr15:57491000-57505600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:57491000-57506000	Weak transcription	HMEC	breast
17	chr15:57491200-57508000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:57491400-57505800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:57491400-57505800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:57491400-57506000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:57491400-57506200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:57491400-57510000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:57491400-57510000	Weak transcription	Psoas Muscle	Psoas
24	chr15:57491400-57510200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr15:57491400-57511200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:57491600-57505200	Weak transcription	NHLF	lung
27	chr15:57491600-57506000	Weak transcription	Fetal Stomach	stomach
28	chr15:57491600-57508000	Weak transcription	HUVEC	blood vessel
29	chr15:57491600-57515200	Weak transcription	GM12878-XiMat	blood
30	chr15:57492000-57505200	Weak transcription	Fetal Kidney	kidney
31	chr15:57492400-57511600	Weak transcription	Left Ventricle	heart
32	chr15:57493600-57506000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:57494000-57505400	Weak transcription	HSMM	muscle
34	chr15:57494000-57506000	Weak transcription	Fetal Intestine Large	intestine
35	chr15:57494000-57506000	Weak transcription	A549	lung
36	chr15:57494200-57505800	Weak transcription	HepG2	liver
37	chr15:57494200-57508600	Weak transcription	Dnd41	blood
38	chr15:57494800-57506200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:57495000-57506000	Weak transcription	Stomach Mucosa	stomach
40	chr15:57495600-57506200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:57496400-57506000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:57496400-57508000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:57496400-57510200	Weak transcription	Small Intestine	intestine
44	chr15:57496600-57505200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:57496600-57505800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:57496800-57505800	Weak transcription	Osteobl	bone
47	chr15:57497400-57505200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:57498600-57506200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:57501200-57506000	Weak transcription	Fetal Intestine Small	intestine
50	chr15:57501200-57524400	Weak transcription	Thymus	Thymus

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