Variant report

Variant	rs72733142
Chromosome Location	chr15:39169750-39169751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39164966..39167286-chr15:39168256..39172272,5	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72733127	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72733135	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72733146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733151	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733152	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733154	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733157	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832975	chr15:39011915-39227590	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1054810	chr15:39019900-39578526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542359	chr15:39019900-39578526	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1040746	chr15:39126735-39327690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv904090	chr15:39138908-39347192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39155400-39172600	Weak transcription	Pancreas	Pancrea
2	chr15:39165200-39180600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:39165600-39170400	Weak transcription	HSMM	muscle
4	chr15:39166800-39169800	Weak transcription	HepG2	liver
5	chr15:39166800-39176400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:39167200-39170000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:39167200-39176800	Weak transcription	Placenta	Placenta
8	chr15:39167600-39177000	Weak transcription	Fetal Intestine Large	intestine
9	chr15:39168400-39172800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr15:39168400-39172800	Enhancers	A549	lung
11	chr15:39168600-39172800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:39168600-39172800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:39168600-39172800	Enhancers	Ovary	ovary
14	chr15:39168600-39172800	Enhancers	NHLF	lung
15	chr15:39168600-39173000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:39168600-39173000	Enhancers	Fetal Lung	lung
17	chr15:39168800-39169800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:39168800-39170000	Weak transcription	Fetal Brain Male	brain
19	chr15:39168800-39170600	Enhancers	Osteobl	bone
20	chr15:39168800-39172400	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:39169000-39170000	Weak transcription	Fetal Kidney	kidney
22	chr15:39169000-39170400	Enhancers	HSMMtube	muscle
23	chr15:39169000-39172600	Enhancers	Liver	Liver
24	chr15:39169000-39181000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:39169200-39169800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:39169200-39170200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:39169400-39170800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:39169600-39170000	Weak transcription	NHDF-Ad	bronchial
29	chr15:39169600-39170200	Enhancers	Fetal Stomach	stomach
30	chr15:39169600-39170400	Enhancers	Lung	lung
31	chr15:39169600-39171600	Enhancers	Right Atrium	heart

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