Variant report

Variant	rs72733152
Chromosome Location	chr15:39174082-39174083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72733127	0.90[ASN][1000 genomes]
rs72733135	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72733142	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733146	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733147	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733148	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733157	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832975	chr15:39011915-39227590	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1054810	chr15:39019900-39578526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542359	chr15:39019900-39578526	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1040746	chr15:39126735-39327690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv904090	chr15:39138908-39347192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39165200-39180600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:39166800-39176400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:39167200-39176800	Weak transcription	Placenta	Placenta
4	chr15:39167600-39177000	Weak transcription	Fetal Intestine Large	intestine
5	chr15:39169000-39181000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:39170200-39177200	Weak transcription	Fetal Stomach	stomach
7	chr15:39171400-39175600	Weak transcription	HUVEC	blood vessel
8	chr15:39171600-39176200	Weak transcription	Hela-S3	cervix
9	chr15:39171800-39178600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:39172600-39174400	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:39172800-39175800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:39172800-39175800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:39172800-39175800	Weak transcription	NHLF	lung
14	chr15:39172800-39176200	Weak transcription	A549	lung
15	chr15:39172800-39176800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:39172800-39177600	Weak transcription	Ovary	ovary
17	chr15:39172800-39178000	Weak transcription	Aorta	Aorta
18	chr15:39172800-39178000	Weak transcription	Right Atrium	heart
19	chr15:39172800-39182400	Weak transcription	Pancreas	Pancrea
20	chr15:39173000-39174400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:39173000-39174400	Weak transcription	Osteobl	bone
22	chr15:39173000-39175800	Weak transcription	Fetal Lung	lung
23	chr15:39173000-39176200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:39173000-39176200	Weak transcription	HSMM	muscle
25	chr15:39173000-39176200	Weak transcription	NHDF-Ad	bronchial
26	chr15:39173000-39176400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:39173000-39176400	Weak transcription	HSMMtube	muscle
28	chr15:39173000-39176800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:39173000-39177000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:39174000-39174400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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