Variant report

Variant	rs72736018
Chromosome Location	chr15:57599707-57599708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57599033..57602011-chr15:57602301..57604910,2	MCF-7	breast:
2	chr15:57598101..57599763-chr15:57616490..57618411,2	K562	blood:
3	chr15:57597621..57600563-chr15:57604167..57606534,3	K562	blood:
4	chr15:56787707..56790107-chr15:57597582..57600140,2	MCF-7	breast:
5	chr15:57596677..57601983-chr15:57611239..57618411,9	K562	blood:
6	chr15:57597689..57601400-chr15:57611239..57614125,3	K562	blood:
7	chr15:57598904..57601336-chr15:57602570..57606633,5	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF12-1	chr15:57595100-57599967	XLOC_011264

No data

Variant related genes	Relation type
ENSG00000260172	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10152152	0.85[EUR][1000 genomes]
rs59560108	0.88[EUR][1000 genomes]
rs72731930	1.00[AFR][1000 genomes]
rs72736021	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57598200-57599800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr15:57598200-57600000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:57598600-57600800	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr15:57599000-57599800	Weak transcription	Fetal Kidney	kidney
5	chr15:57599000-57600400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:57599000-57600600	Enhancers	Fetal Lung	lung
7	chr15:57599000-57600800	Enhancers	HepG2	liver
8	chr15:57599000-57603000	Weak transcription	K562	blood
9	chr15:57599400-57599800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:57599400-57600000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:57599400-57600000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:57599400-57600000	Enhancers	Fetal Muscle Leg	muscle
13	chr15:57599400-57600000	Enhancers	Gastric	stomach
14	chr15:57599400-57600200	Genic enhancers	Primary B cells from peripheral blood	blood
15	chr15:57599400-57600200	Enhancers	Liver	Liver
16	chr15:57599400-57600200	Enhancers	Fetal Intestine Large	intestine
17	chr15:57599400-57600200	Enhancers	Stomach Mucosa	stomach
18	chr15:57599400-57600400	Enhancers	Fetal Stomach	stomach
19	chr15:57599400-57600600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:57599400-57600600	Enhancers	A549	lung
21	chr15:57599400-57601200	Enhancers	Fetal Intestine Small	intestine
22	chr15:57599400-57601800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr15:57599400-57602600	Weak transcription	Brain Germinal Matrix	brain
24	chr15:57599400-57604600	Weak transcription	Right Ventricle	heart
25	chr15:57599400-57605000	Weak transcription	Fetal Brain Female	brain
26	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:57599600-57599800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:57599600-57599800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr15:57599600-57599800	Weak transcription	Primary B cells from cord blood	blood
30	chr15:57599600-57599800	Enhancers	Adipose Nuclei	Adipose
31	chr15:57599600-57600000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr15:57599600-57600000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:57599600-57600000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:57599600-57600000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:57599600-57600000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr15:57599600-57600000	Enhancers	Osteobl	bone
37	chr15:57599600-57600200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:57599600-57600200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:57599600-57600400	Enhancers	Colonic Mucosa	Colon
40	chr15:57599600-57600400	Enhancers	Fetal Muscle Trunk	muscle
41	chr15:57599600-57600600	Enhancers	Duodenum Mucosa	Duodenum
42	chr15:57599600-57600600	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr15:57599600-57601200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:57599600-57601400	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr15:57599600-57602000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr15:57599600-57602000	Weak transcription	Placenta	Placenta
47	chr15:57599600-57602400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:57599600-57602400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:57599600-57603800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:57599600-57604600	Weak transcription	Fetal Thymus	thymus

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