Variant report
| Variant | rs72736465 |
|---|---|
| Chromosome Location | chr15:56372846-56372847 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11630710 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11633911 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11634404 | 0.81[EUR][1000 genomes] |
| rs12443118 | 0.81[EUR][1000 genomes] |
| rs12592690 | 0.80[EUR][1000 genomes] |
| rs12595072 | 0.81[EUR][1000 genomes] |
| rs1553737 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1553738 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17238607 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs34383693 | 0.81[EUR][1000 genomes] |
| rs35371323 | 0.89[EUR][1000 genomes] |
| rs3803459 | 0.82[EUR][1000 genomes] |
| rs4142481 | 0.81[EUR][1000 genomes] |
| rs55946012 | 0.82[EUR][1000 genomes] |
| rs57310185 | 0.89[EUR][1000 genomes] |
| rs58036957 | 0.82[EUR][1000 genomes] |
| rs59025920 | 0.81[EUR][1000 genomes] |
| rs61373424 | 0.82[EUR][1000 genomes] |
| rs66670902 | 0.82[EUR][1000 genomes] |
| rs68187092 | 0.82[EUR][1000 genomes] |
| rs7175969 | 0.99[EUR][1000 genomes] |
| rs72736464 | 0.84[EUR][1000 genomes] |
| rs72736479 | 0.81[EUR][1000 genomes] |
| rs72736484 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72736495 | 0.81[EUR][1000 genomes] |
| rs72736498 | 0.82[EUR][1000 genomes] |
| rs72736501 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72738604 | 0.81[EUR][1000 genomes] |
| rs72738605 | 0.81[EUR][1000 genomes] |
| rs72738607 | 0.81[EUR][1000 genomes] |
| rs72738608 | 0.80[EUR][1000 genomes] |
| rs72738651 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761872 | chr15:56211065-56426501 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv833018 | chr15:56325799-56492535 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1045906 | chr15:56333180-56473614 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:56363600-56383800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 2 | chr15:56369800-56385600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
