Variant report

Variant	rs1553737
Chromosome Location	chr15:56370492-56370493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56369125..56370857-chr15:56537851..56540743,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10518839	0.92[CEU][hapmap]
rs10518843	1.00[CEU][hapmap]
rs11071246	0.81[EUR][1000 genomes]
rs11071253	1.00[CEU][hapmap]
rs11629674	1.00[CEU][hapmap]
rs11630710	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11631518	1.00[CEU][hapmap]
rs11632087	1.00[CEU][hapmap]
rs11632091	0.91[CEU][hapmap]
rs11633911	1.00[EUR][1000 genomes]
rs11634404	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11636040	0.83[CEU][hapmap]
rs12443118	0.82[EUR][1000 genomes]
rs12592096	1.00[CEU][hapmap]
rs12592690	0.81[EUR][1000 genomes]
rs12593569	1.00[CEU][hapmap]
rs12595072	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12595557	1.00[CEU][hapmap]
rs1550586	1.00[CEU][hapmap]
rs1553738	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976808	1.00[CHB][hapmap]
rs17238607	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1867089	1.00[CEU][hapmap]
rs1879344	1.00[CEU][hapmap]
rs1879347	1.00[CEU][hapmap]
rs1879349	1.00[CEU][hapmap]
rs2249183	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[MEX][hapmap]
rs34383693	0.82[EUR][1000 genomes]
rs35371323	0.90[EUR][1000 genomes]
rs3803459	0.83[EUR][1000 genomes]
rs4142481	0.82[EUR][1000 genomes]
rs55946012	0.83[EUR][1000 genomes]
rs57310185	0.90[EUR][1000 genomes]
rs58036957	0.83[EUR][1000 genomes]
rs59025920	0.82[EUR][1000 genomes]
rs61373424	0.83[EUR][1000 genomes]
rs61500930	0.81[EUR][1000 genomes]
rs66670902	0.83[EUR][1000 genomes]
rs68187092	0.83[EUR][1000 genomes]
rs7175969	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72736464	0.82[EUR][1000 genomes]
rs72736465	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72736479	0.82[EUR][1000 genomes]
rs72736484	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72736495	0.82[EUR][1000 genomes]
rs72736498	0.83[EUR][1000 genomes]
rs72736501	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72738604	0.82[EUR][1000 genomes]
rs72738605	0.82[EUR][1000 genomes]
rs72738607	0.82[EUR][1000 genomes]
rs72738608	0.81[EUR][1000 genomes]
rs72738651	0.88[EUR][1000 genomes]
rs764014	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1553737	MNS1	cis	parietal	SCAN
rs1553737	PXDN	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56363600-56383800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:56366400-56370600	Enhancers	Fetal Brain Male	brain
3	chr15:56369800-56385600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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