Variant report

Variant	rs2249183
Chromosome Location	chr15:56557151-56557152
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56535639..56539237-chr15:56554453..56558702,5	K562	blood:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10518843	0.85[CEU][hapmap]
rs1087837	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs11071253	0.85[CEU][hapmap]
rs11629674	0.85[CEU][hapmap]
rs11631518	0.85[CEU][hapmap]
rs11631618	0.86[AMR][1000 genomes]
rs11632087	0.83[CEU][hapmap]
rs11632091	0.91[CEU][hapmap]
rs11632260	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11634404	0.85[CEU][hapmap]
rs11638060	0.92[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs11638872	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs11639320	1.00[JPT][hapmap]
rs12592096	0.84[CEU][hapmap]
rs12593569	0.85[CEU][hapmap]
rs12595072	0.85[CEU][hapmap]
rs12595557	0.85[CEU][hapmap]
rs1550586	0.85[CEU][hapmap]
rs1579370	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16976808	1.00[CHB][hapmap]
rs1715919	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs17238607	0.85[CEU][hapmap]
rs1867089	0.84[CEU][hapmap]
rs1879344	0.85[CEU][hapmap]
rs1879347	0.85[CEU][hapmap]
rs1879349	0.84[CEU][hapmap]
rs3848113	0.82[AMR][1000 genomes]
rs4392004	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55759746	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs705450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7163544	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs7175969	0.82[ASN][1000 genomes]
rs72736484	0.82[ASN][1000 genomes]
rs72736501	0.84[ASN][1000 genomes]
rs72740524	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72740533	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72740534	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72740560	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72740562	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72740574	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72740578	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72740579	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72740592	0.86[AMR][1000 genomes]
rs72742607	0.86[AMR][1000 genomes]
rs72742619	0.82[AMR][1000 genomes]
rs72742636	0.82[AMR][1000 genomes]
rs72742652	0.82[AMR][1000 genomes]
rs764014	0.85[CEU][hapmap]
rs795785	0.82[AMR][1000 genomes]
rs795793	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs813267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2249183	MNS1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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