Variant report

Variant	rs72740533
Chromosome Location	chr15:56588278-56588279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56582054..56583561-chr15:56587969..56590161,2	MCF-7	breast:
2	chr15:56584163..56586354-chr15:56587012..56588620,2	K562	blood:
3	chr15:56587524..56588313-chr15:56720286..56721333,4	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11631618	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11632260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11638076	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11638872	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1579370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2249183	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4392004	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55759746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7163544	0.82[AMR][1000 genomes]
rs72736484	0.82[AMR][1000 genomes]
rs72736501	0.82[AMR][1000 genomes]
rs72740524	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72740534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72740562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72740574	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72740578	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72740579	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72740592	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72742607	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72742619	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72742631	0.81[AMR][1000 genomes]
rs72742636	0.83[AFR][1000 genomes]
rs72742686	0.83[AFR][1000 genomes]
rs795785	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv977854	chr15:56583544-56599264	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56588200-56588600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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