Variant report

Variant	rs72740560
Chromosome Location	chr15:56613903-56613904
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56613331..56614994-chr15:56619251..56621411,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11631618	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11632260	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11638060	0.84[EUR][1000 genomes]
rs11638076	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11638872	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11638965	0.89[EUR][1000 genomes]
rs1579370	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2249183	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3848113	0.81[EUR][1000 genomes]
rs4392004	0.95[AMR][1000 genomes]
rs55759746	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7163544	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736501	0.82[AMR][1000 genomes]
rs72740524	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72740533	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72740534	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72740562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72740574	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72740578	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72740579	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72740592	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72742607	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72742619	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72742631	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72742636	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72742652	0.84[EUR][1000 genomes]
rs72742667	0.82[EUR][1000 genomes]
rs72742686	1.00[AFR][1000 genomes]
rs795781	0.87[EUR][1000 genomes]
rs795785	0.84[EUR][1000 genomes]
rs795793	0.81[EUR][1000 genomes]
rs813267	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56612000-56614600	Enhancers	Duodenum Mucosa	Duodenum
2	chr15:56612600-56614600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:56612600-56614600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:56612800-56614000	Enhancers	Fetal Intestine Small	intestine
5	chr15:56612800-56614400	Enhancers	NHEK	skin
6	chr15:56613400-56614000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr15:56613400-56623400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:56613600-56614600	Weak transcription	K562	blood
9	chr15:56613600-56616800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:56613800-56619600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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