Variant report
| Variant | rs72740524 |
|---|---|
| Chromosome Location | chr15:56557715-56557716 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:56535639..56539237-chr15:56554453..56558702,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151575 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11631618 | 0.80[AMR][1000 genomes] |
| rs11632260 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11638872 | 0.80[AMR][1000 genomes] |
| rs1579370 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2249183 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4392004 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs55759746 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72738651 | 0.84[AMR][1000 genomes] |
| rs72740533 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72740534 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72740560 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72740562 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72740574 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72740578 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72740579 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72740592 | 0.80[AMR][1000 genomes] |
| rs72742607 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv569547 | chr15:56504598-56572176 | ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
