Variant report

Variant	rs11631618
Chromosome Location	chr15:56648693-56648694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10518843	0.85[CEU][hapmap]
rs1087837	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11632091	0.84[CEU][hapmap]
rs11632260	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11638060	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11638076	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11638872	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11638965	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11639320	1.00[JPT][hapmap]
rs12593569	0.85[CEU][hapmap]
rs12595557	0.85[CEU][hapmap]
rs1579370	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16976808	1.00[CHB][hapmap]
rs1711483	0.92[CEU][hapmap]
rs1715919	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1879347	0.85[CEU][hapmap]
rs2249183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs3848113	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4392004	0.86[AMR][1000 genomes]
rs55759746	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs705450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7163544	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72740524	0.80[AMR][1000 genomes]
rs72740533	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72740534	0.90[AMR][1000 genomes]
rs72740560	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72740562	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72740574	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72740578	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72740579	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72740592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742607	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72742619	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72742631	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72742636	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72742652	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72742667	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs795781	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs795785	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs795793	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs813267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:56646600-56648800	Weak transcription	NHDF-Ad	bronchial
4	chr15:56647800-56650600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:56648200-56649400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:56648200-56649400	Enhancers	Osteobl	bone
7	chr15:56648200-56649600	Enhancers	HSMMtube	muscle
8	chr15:56648400-56649000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:56648400-56649200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:56648400-56649400	Enhancers	GM12878-XiMat	blood
11	chr15:56648600-56649200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:56648600-56649200	Enhancers	NHEK	skin
13	chr15:56648600-56649400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:56648600-56649400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr15:56648600-56649600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:56648600-56649600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:56648600-56649600	Enhancers	HSMM	muscle

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