Variant report

Variant	rs11632260
Chromosome Location	chr15:56601818-56601819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF12-7	chr15:56601442-56602860	ucscGeneNc_uc002afc_2

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1087837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11631618	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11638060	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11638076	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11638872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11639320	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1579370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16976808	1.00[CHB][hapmap]
rs1711483	1.00[CEU][hapmap]
rs1715919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2249183	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4392004	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55759746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs705450	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7163544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs72736484	0.82[AMR][1000 genomes]
rs72736501	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72740524	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72740533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72740534	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72740560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72740562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72740574	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72740578	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72740579	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72740592	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72742607	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72742619	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72742631	0.81[AMR][1000 genomes]
rs72742636	0.83[AFR][1000 genomes]
rs72742686	0.83[AFR][1000 genomes]
rs795785	0.86[AFR][1000 genomes]
rs795793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs813267	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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