Variant report
| Variant | rs72740534 |
|---|---|
| Chromosome Location | chr15:56588404-56588405 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11631618 | 0.90[AMR][1000 genomes] |
| rs11632260 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11638076 | 0.81[AMR][1000 genomes] |
| rs11638872 | 0.90[AMR][1000 genomes] |
| rs1579370 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2249183 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4392004 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs55759746 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7163544 | 0.82[AMR][1000 genomes] |
| rs72736484 | 0.82[AMR][1000 genomes] |
| rs72736501 | 0.82[AMR][1000 genomes] |
| rs72740524 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72740533 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72740560 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72740562 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72740574 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72740578 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72740579 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72740592 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72742607 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72742619 | 0.86[AMR][1000 genomes] |
| rs72742631 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv977854 | chr15:56583544-56599264 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:56588200-56588600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
