Variant report

Variant	rs4392004
Chromosome Location	chr15:56548922-56548923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10518843	0.86[CEU][hapmap]
rs1087837	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs11071253	0.86[CEU][hapmap]
rs11629674	0.86[CEU][hapmap]
rs11631518	0.86[CEU][hapmap]
rs11631618	0.86[AMR][1000 genomes]
rs11632087	0.85[CEU][hapmap]
rs11632091	0.92[CEU][hapmap]
rs11632260	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11634404	0.86[CEU][hapmap]
rs11638060	1.00[ASW][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]
rs11638872	1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs12592096	0.85[CEU][hapmap]
rs12593569	0.86[CEU][hapmap]
rs12595072	0.86[CEU][hapmap]
rs12595557	0.86[CEU][hapmap]
rs1550586	0.86[CEU][hapmap]
rs1579370	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16976808	1.00[CHB][hapmap]
rs17238607	0.86[CEU][hapmap]
rs1867089	0.85[CEU][hapmap]
rs1879344	0.86[CEU][hapmap]
rs1879347	0.86[CEU][hapmap]
rs1879349	0.85[CEU][hapmap]
rs2249183	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28375970	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs28685291	0.88[LWK][hapmap];1.00[YRI][hapmap]
rs55759746	0.95[AMR][1000 genomes]
rs705450	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs7163544	1.00[CHB][hapmap]
rs72740524	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72740533	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72740534	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72740560	0.95[AMR][1000 genomes]
rs72740562	0.95[AMR][1000 genomes]
rs72740574	0.86[AMR][1000 genomes]
rs72740578	0.86[AMR][1000 genomes]
rs72740579	0.86[AMR][1000 genomes]
rs72740592	0.86[AMR][1000 genomes]
rs72742607	0.86[AMR][1000 genomes]
rs72742619	0.82[AMR][1000 genomes]
rs764014	0.86[CEU][hapmap]
rs795793	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs813267	0.86[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4392004	MNS1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56548600-56553800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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