Variant report

Variant	rs72736563
Chromosome Location	chr1:221924654-221924655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221910475..221912061-chr1:221923373..221925676,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143507	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10779455	1.00[ASN][1000 genomes]
rs10863650	1.00[ASN][1000 genomes]
rs11118830	1.00[ASN][1000 genomes]
rs11118832	1.00[ASN][1000 genomes]
rs11118849	1.00[ASN][1000 genomes]
rs11118851	1.00[ASN][1000 genomes]
rs11576121	1.00[ASN][1000 genomes]
rs12058360	1.00[ASN][1000 genomes]
rs12129426	1.00[ASN][1000 genomes]
rs12134197	1.00[ASN][1000 genomes]
rs4603139	0.84[EUR][1000 genomes]
rs56714236	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57933155	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58058349	1.00[ASN][1000 genomes]
rs58969712	1.00[ASN][1000 genomes]
rs59070710	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60950693	1.00[ASN][1000 genomes]
rs6679673	1.00[ASN][1000 genomes]
rs6689267	1.00[ASN][1000 genomes]
rs6693577	1.00[ASN][1000 genomes]
rs67225019	1.00[ASN][1000 genomes]
rs72736551	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736552	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736557	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736561	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736562	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736565	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72736571	1.00[ASN][1000 genomes]
rs7340042	1.00[ASN][1000 genomes]
rs7534227	1.00[ASN][1000 genomes]
rs7549374	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469786	chr1:221855871-222040335	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482867	chr1:221855871-222040335	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv1007092	chr1:221883491-221958279	Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv535303	chr1:221883491-221958279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221917400-221926000	Weak transcription	Lung	lung
2	chr1:221917400-221931000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:221924200-221925000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:221924200-221925200	Enhancers	Fetal Thymus	thymus
5	chr1:221924400-221925000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:221924400-221925200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:221924400-221925200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:221924400-221925200	Enhancers	Thymus	Thymus
9	chr1:221924400-221927200	ZNF genes & repeats	GM12878-XiMat	blood
10	chr1:221924600-221925200	Enhancers	Monocytes-CD14+_RO01746	blood

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