The 2.0 version of rSNPBase

Variant report

Variant rs7534227
Chromosome Location chr1:221895831-221895832
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:221879600-221902400 Enhancers Brain Substantia Nigra brain
2 chr1:221879800-221896800 Enhancers Colon Smooth Muscle Colon
3 chr1:221882800-221899000 Genic enhancers HSMM muscle
4 chr1:221884800-221896200 Enhancers Rectal Smooth Muscle rectum
5 chr1:221886200-221896000 Weak transcription NHEK skin
6 chr1:221886600-221896000 Weak transcription Aorta Aorta
7 chr1:221886600-221897000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr1:221886600-221897000 Weak transcription Duodenum Mucosa Duodenum
9 chr1:221886600-221897000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:221887200-221899000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr1:221887800-221898400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr1:221888000-221899000 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr1:221888000-221903000 Enhancers Brain Hippocampus Middle brain
14 chr1:221888600-221896800 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr1:221888800-221898600 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr1:221889000-221896600 Weak transcription Primary T cells from cord blood blood
17 chr1:221889400-221899600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:221889600-221896400 Weak transcription Dnd41 blood
19 chr1:221889800-221899000 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr1:221890400-221898400 Weak transcription Primary T cells fromperipheralblood blood
21 chr1:221890600-221896400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:221890600-221896600 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr1:221890800-221896200 Weak transcription Fetal Intestine Small intestine
24 chr1:221890800-221906400 Weak transcription Right Ventricle heart
25 chr1:221890800-221910200 Weak transcription Lung lung
26 chr1:221891800-221911000 Weak transcription Gastric stomach
27 chr1:221891800-221913000 Weak transcription Fetal Intestine Large intestine
28 chr1:221892200-221898200 Enhancers HSMMtube muscle
29 chr1:221892400-221896600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:221892400-221901400 Weak transcription Small Intestine intestine
31 chr1:221892600-221896200 Enhancers Osteobl bone
32 chr1:221892600-221898000 Weak transcription Stomach Mucosa stomach
33 chr1:221892800-221896400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr1:221892800-221896400 Weak transcription Primary B cells from peripheral blood blood
35 chr1:221892800-221896800 Weak transcription Stomach Smooth Muscle stomach
36 chr1:221892800-221897000 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr1:221892800-221897400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr1:221892800-221899000 Weak transcription Thymus Thymus
39 chr1:221893000-221896000 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr1:221893000-221896400 Weak transcription H9 Cell Line embryonic stem cell
41 chr1:221893000-221896600 Weak transcription Fetal Lung lung
42 chr1:221893000-221913600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr1:221893200-221896000 Weak transcription Primary hematopoietic stem cells blood
44 chr1:221893200-221897000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr1:221893200-221898000 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:221893200-221899400 Genic enhancers Liver Liver
47 chr1:221893400-221896000 Weak transcription Hela-S3 cervix
48 chr1:221893400-221896400 Weak transcription HepG2 liver
49 chr1:221893400-221897000 Weak transcription Adipose Nuclei Adipose
50 chr1:221893800-221896000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015