Variant report

Variant	rs72739660
Chromosome Location	chr15:41768294-41768295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41766904..41769343-chr15:41855092..41857004,2	MCF-7	breast:
2	chr15:41767730..41772843-chr15:41782564..41789351,11	K562	blood:

Variant related genes	Relation type
ENSG00000137825	Chromatin interaction
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12324564	1.00[AFR][1000 genomes]
rs2026947	1.00[AFR][1000 genomes]
rs35227875	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72739617	1.00[AFR][1000 genomes]
rs72739627	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933757	chr15:41641236-41773058	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
2	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41722000-41768400	Weak transcription	Small Intestine	intestine
2	chr15:41724200-41777200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41729200-41773000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:41730000-41768400	Weak transcription	Psoas Muscle	Psoas
5	chr15:41730800-41769000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:41744000-41771800	Strong transcription	Fetal Intestine Small	intestine
7	chr15:41745200-41775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:41753000-41775000	Strong transcription	Fetal Stomach	stomach
9	chr15:41753800-41776800	Strong transcription	Fetal Muscle Leg	muscle
10	chr15:41754000-41774400	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:41754200-41775200	Strong transcription	Primary T cells from cord blood	blood
12	chr15:41754200-41776000	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:41754400-41774600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:41754400-41775000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:41754400-41776800	Strong transcription	Placenta	Placenta
16	chr15:41755000-41769400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:41755000-41775600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr15:41755400-41775200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:41756800-41769000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:41756800-41776200	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:41757000-41769000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:41757000-41774200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:41757000-41776200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:41757000-41776400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:41757200-41774400	Strong transcription	Fetal Brain Female	brain
26	chr15:41757200-41774600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:41757200-41775400	Strong transcription	Fetal Thymus	thymus
28	chr15:41757400-41774000	Strong transcription	Spleen	Spleen
29	chr15:41757400-41774200	Strong transcription	Thymus	Thymus
30	chr15:41757400-41776800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr15:41758200-41768400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:41758400-41774000	Strong transcription	Lung	lung
33	chr15:41759000-41772400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:41759000-41774400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:41759000-41775000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:41759200-41771400	Weak transcription	Fetal Heart	heart
37	chr15:41760600-41768400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:41760600-41774000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr15:41760600-41774400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr15:41760800-41773800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:41760800-41775600	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr15:41761000-41776400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:41761200-41769200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:41761200-41771600	Strong transcription	Fetal Intestine Large	intestine
45	chr15:41761200-41774400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:41761800-41768800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:41761800-41772600	Strong transcription	Fetal Kidney	kidney
48	chr15:41762000-41776000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:41762200-41773600	Strong transcription	Colon Smooth Muscle	Colon
50	chr15:41762200-41773800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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