Variant report

Variant	rs35227875
Chromosome Location	chr15:41688732-41688733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41685725..41690620-chr15:41692934..41695677,5	K562	blood:
2	chr15:41687654..41690620-chr15:41692610..41695958,4	K562	blood:
3	chr15:41681566..41684125-chr15:41686638..41690389,3	K562	blood:

Variant related genes	Relation type
ENSG00000137806	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12324564	1.00[AFR][1000 genomes]
rs12911459	1.00[CHD][hapmap];1.00[YRI][hapmap]
rs2026947	1.00[AFR][1000 genomes]
rs2076955	1.00[YRI][hapmap]
rs2278658	1.00[YRI][hapmap]
rs72739617	1.00[AFR][1000 genomes]
rs72739627	1.00[AFR][1000 genomes]
rs72739660	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1039283	chr15:41620499-41745480	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
5	nsv933757	chr15:41641236-41773058	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41625800-41694200	Weak transcription	Small Intestine	intestine
2	chr15:41660200-41693800	Weak transcription	Right Ventricle	heart
3	chr15:41661800-41693200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:41672000-41693600	Weak transcription	Colonic Mucosa	Colon
5	chr15:41673400-41693800	Weak transcription	HMEC	breast
6	chr15:41673600-41693800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:41673600-41693800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:41673800-41693600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:41674000-41693800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:41674000-41693800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:41676400-41689400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:41676400-41689400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:41676400-41689400	Strong transcription	Fetal Thymus	thymus
14	chr15:41676400-41692200	Strong transcription	Fetal Stomach	stomach
15	chr15:41677000-41693400	Weak transcription	HepG2	liver
16	chr15:41677200-41693400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:41678200-41689200	Strong transcription	Liver	Liver
18	chr15:41678400-41693800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:41678800-41689200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:41679200-41693800	Weak transcription	Stomach Mucosa	stomach
21	chr15:41680000-41691400	Strong transcription	Fetal Muscle Leg	muscle
22	chr15:41680000-41694000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr15:41681200-41693800	Weak transcription	NHDF-Ad	bronchial
24	chr15:41682000-41693200	Weak transcription	Psoas Muscle	Psoas
25	chr15:41683400-41689200	Strong transcription	Left Ventricle	heart
26	chr15:41683400-41689400	Strong transcription	Brain Angular Gyrus	brain
27	chr15:41683600-41689400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:41683600-41689400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:41683600-41689400	Strong transcription	Fetal Intestine Large	intestine
30	chr15:41684000-41689200	Strong transcription	Adipose Nuclei	Adipose
31	chr15:41684000-41689200	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr15:41684600-41689200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr15:41684600-41689200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:41684600-41689400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:41684600-41689400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr15:41684800-41689400	Strong transcription	Brain Cingulate Gyrus	brain
37	chr15:41684800-41689400	Strong transcription	Placenta	Placenta
38	chr15:41685000-41689200	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:41685000-41689200	Strong transcription	HSMM	muscle
40	chr15:41685000-41689600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:41685200-41689400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:41685400-41691600	Strong transcription	Fetal Intestine Small	intestine
43	chr15:41685400-41693800	Weak transcription	Fetal Heart	heart
44	chr15:41685800-41689200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:41686000-41689200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:41686200-41689000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:41686200-41689000	Strong transcription	Brain Substantia Nigra	brain
48	chr15:41686200-41689000	Strong transcription	Fetal Lung	lung
49	chr15:41686200-41689000	Strong transcription	Thymus	Thymus
50	chr15:41686200-41689200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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