Variant report

Variant	rs2278658
Chromosome Location	chr15:41796971-41796972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41760851..41762536-chr15:41796703..41799672,2	MCF-7	breast:
2	chr15:41786611..41788959-chr15:41795033..41798597,3	MCF-7	breast:
3	chr15:41794716..41797159-chr15:41959395..41960897,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11544384	1.00[LWK][hapmap]
rs12911459	1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12912410	1.00[LWK][hapmap]
rs2076955	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs35227875	1.00[YRI][hapmap]
rs7181340	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv904110	chr15:41776692-41813279	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv904111	chr15:41777898-41805115	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv471241	chr15:41783814-41820200	Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv569233	chr15:41784809-41805237	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv33378	chr15:41786505-41805760	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41789400-41802600	Weak transcription	K562	blood
2	chr15:41789600-41798200	Weak transcription	HepG2	liver
3	chr15:41795200-41799600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:41795200-41800000	Weak transcription	Liver	Liver
5	chr15:41795400-41800000	Weak transcription	Pancreas	Pancrea
6	chr15:41795400-41803600	Weak transcription	Lung	lung
7	chr15:41795400-41804200	Weak transcription	Right Atrium	heart
8	chr15:41795600-41799400	Weak transcription	Colonic Mucosa	Colon
9	chr15:41795600-41799400	Weak transcription	Gastric	stomach
10	chr15:41795600-41799400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:41795600-41801200	Strong transcription	Fetal Intestine Small	intestine
12	chr15:41795800-41797600	Weak transcription	Spleen	Spleen
13	chr15:41796000-41797200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr15:41796200-41797000	Strong transcription	Fetal Intestine Large	intestine
15	chr15:41796400-41800000	Weak transcription	HMEC	breast
16	chr15:41796600-41797000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:41796600-41797200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:41796600-41800200	Weak transcription	Esophagus	oesophagus
19	chr15:41796800-41798200	Weak transcription	Stomach Mucosa	stomach
20	chr15:41796800-41799200	Weak transcription	Rectal Mucosa Donor 31	rectum

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