Variant report

Variant	rs72739702
Chromosome Location	chr15:41861542-41861543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1023193	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1079371	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635790	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639399	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148316	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741804	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026760	0.89[AMR][1000 genomes]
rs8042535	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043421	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs72739702	RPAP1	cis	Artery Tibial	GTEx
rs72739702	LTK	cis	lung	GTEx

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41852600-41877400	Weak transcription	HMEC	breast
4	chr15:41852800-41877400	Weak transcription	NHEK	skin
5	chr15:41853000-41861800	Genic enhancers	Fetal Intestine Large	intestine
6	chr15:41853000-41862000	Genic enhancers	Fetal Intestine Small	intestine
7	chr15:41853200-41861800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
10	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
11	chr15:41853600-41862200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
13	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
15	chr15:41855400-41862000	Weak transcription	NHLF	lung
16	chr15:41855400-41863400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:41855400-41864400	Genic enhancers	Brain Hippocampus Middle	brain
18	chr15:41855400-41877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:41855400-41877200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:41856400-41861800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:41857200-41862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:41857400-41864000	Genic enhancers	Brain Inferior Temporal Lobe	brain
23	chr15:41857600-41863200	Weak transcription	Fetal Brain Female	brain
24	chr15:41858800-41863200	Genic enhancers	Ovary	ovary
25	chr15:41859000-41865400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:41859000-41866200	Weak transcription	NHDF-Ad	bronchial
27	chr15:41859000-41869000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:41859600-41865800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr15:41859600-41868000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:41860200-41862400	Weak transcription	Dnd41	blood
31	chr15:41860200-41866200	Strong transcription	Esophagus	oesophagus
32	chr15:41860800-41861800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr15:41860800-41861800	Weak transcription	Spleen	Spleen
34	chr15:41860800-41863000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:41860800-41871800	Strong transcription	Brain Germinal Matrix	brain
36	chr15:41861000-41862000	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:41861000-41863000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:41861000-41863600	Genic enhancers	Brain Substantia Nigra	brain
39	chr15:41861000-41877200	Weak transcription	HUVEC	blood vessel
40	chr15:41861200-41861600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr15:41861200-41861800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:41861200-41861800	Genic enhancers	Fetal Kidney	kidney
43	chr15:41861200-41862000	Genic enhancers	H1 Cell Line	embryonic stem cell
44	chr15:41861200-41862200	Enhancers	Adipose Nuclei	Adipose
45	chr15:41861200-41862200	Weak transcription	Pancreas	Pancrea
46	chr15:41861200-41862800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:41861200-41862800	Weak transcription	Right Atrium	heart
48	chr15:41861200-41863000	Weak transcription	Lung	lung
49	chr15:41861200-41865200	Weak transcription	Gastric	stomach
50	chr15:41861200-41867400	Weak transcription	Left Ventricle	heart

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