Variant report

Variant	rs8024626
Chromosome Location	chr15:41863181-41863182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1023193	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1079371	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635790	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639399	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148316	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741804	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026760	0.89[AMR][1000 genomes]
rs8042535	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043421	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329739	chr15:41862882-41863238	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8024626	LTK	cis	lung	GTEx
rs8024626	RPAP1	cis	Artery Tibial	GTEx

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41852600-41877400	Weak transcription	HMEC	breast
4	chr15:41852800-41877400	Weak transcription	NHEK	skin
5	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
7	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
8	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
9	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
11	chr15:41855400-41863400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:41855400-41864400	Genic enhancers	Brain Hippocampus Middle	brain
13	chr15:41855400-41877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:41855400-41877200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:41857400-41864000	Genic enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:41857600-41863200	Weak transcription	Fetal Brain Female	brain
17	chr15:41858800-41863200	Genic enhancers	Ovary	ovary
18	chr15:41859000-41865400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:41859000-41866200	Weak transcription	NHDF-Ad	bronchial
20	chr15:41859000-41869000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:41859600-41865800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr15:41859600-41868000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:41860200-41866200	Strong transcription	Esophagus	oesophagus
24	chr15:41860800-41871800	Strong transcription	Brain Germinal Matrix	brain
25	chr15:41861000-41863600	Genic enhancers	Brain Substantia Nigra	brain
26	chr15:41861000-41877200	Weak transcription	HUVEC	blood vessel
27	chr15:41861200-41865200	Weak transcription	Gastric	stomach
28	chr15:41861200-41867400	Weak transcription	Left Ventricle	heart
29	chr15:41861200-41870000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:41861200-41870000	Weak transcription	HSMMtube	muscle
31	chr15:41861200-41871200	Weak transcription	Small Intestine	intestine
32	chr15:41861200-41877000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr15:41861400-41863600	Strong transcription	Fetal Lung	lung
34	chr15:41861400-41865000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:41861400-41865400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:41861400-41867400	Weak transcription	Right Ventricle	heart
37	chr15:41861400-41868000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:41861400-41870000	Strong transcription	Fetal Muscle Leg	muscle
39	chr15:41861400-41870400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:41861400-41870400	Strong transcription	Fetal Stomach	stomach
41	chr15:41861400-41870600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr15:41861400-41870600	Strong transcription	Fetal Muscle Trunk	muscle
43	chr15:41861400-41870800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr15:41861400-41871000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:41861400-41871400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:41861400-41871400	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:41861400-41873200	Weak transcription	K562	blood
48	chr15:41861600-41868000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:41861600-41868200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:41861600-41871400	Strong transcription	H9 Cell Line	embryonic stem cell

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