Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:57914932..57916732-chr9:93116621..93119481,2	MCF-7	breast:
2	chr1:45195117..45197029-chr9:93118640..93120158,2	K562	blood:
3	chr1:45185888..45187495-chr9:93118658..93120159,2	K562	blood:
4	chr9:93103277..93106203-chr9:93118468..93120864,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction
ENSG00000200169	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs58629287	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59080458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60526356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67207011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67951892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72741365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741366	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741392	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72741400	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72741402	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742912	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742914	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742920	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742922	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742924	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742929	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742932	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72742933	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv528155	chr9:93106543-93152717	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv516680	chr9:93116944-93138600	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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