Variant report

Variant	rs72743363
Chromosome Location	chr15:74104811-74104812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12438304	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12442248	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12442263	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16958292	0.90[EUR][1000 genomes]
rs16958300	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28576159	0.93[EUR][1000 genomes]
rs7174255	0.80[ASN][1000 genomes]
rs72743364	0.81[EUR][1000 genomes]
rs9920550	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
2	chr15:74100200-74105400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74102600-74105000	Weak transcription	Brain Angular Gyrus	brain
4	chr15:74102600-74105000	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:74103000-74105000	Weak transcription	Spleen	Spleen
6	chr15:74103200-74105000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:74103200-74105400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:74104000-74105200	Bivalent Enhancer	Fetal Stomach	stomach
9	chr15:74104000-74106800	Enhancers	Fetal Muscle Trunk	muscle
10	chr15:74104000-74107400	Enhancers	Fetal Muscle Leg	muscle
11	chr15:74104200-74105800	Enhancers	Fetal Lung	lung
12	chr15:74104800-74105000	Bivalent Enhancer	HSMMtube	muscle
13	chr15:74104800-74105200	Enhancers	Ovary	ovary
14	chr15:74104800-74105800	Enhancers	Fetal Kidney	kidney
15	chr15:74104800-74106000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:74104800-74106200	Enhancers	Fetal Brain Female	brain
17	chr15:74104800-74107000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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