Variant report

Variant	rs9920550
Chromosome Location	chr15:74100696-74100697
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12438304	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12442248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16958292	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16958300	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28576159	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28628284	0.82[AFR][1000 genomes]
rs72743363	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74089600-74101800	Weak transcription	Spleen	Spleen
2	chr15:74096400-74103000	Weak transcription	Right Ventricle	heart
3	chr15:74096600-74101600	Weak transcription	Right Atrium	heart
4	chr15:74096600-74101800	Weak transcription	Left Ventricle	heart
5	chr15:74096600-74102200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:74097800-74101800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:74097800-74102000	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
9	chr15:74098000-74101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:74098000-74102200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:74099000-74101800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:74099200-74101800	Weak transcription	Fetal Brain Female	brain
13	chr15:74099600-74101800	Weak transcription	Fetal Brain Male	brain
14	chr15:74100000-74101400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:74100000-74102600	Enhancers	HepG2	liver
16	chr15:74100200-74101600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:74100200-74105400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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