The 2.0 version of rSNPBase
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Variant report
Variant
rs72743489
Chromosome Location
chr9:96168483-96168484
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr9:96161251..96163249-chr9:96166631..96169519,2
MCF-7
breast:
2
chr9:95525386..95528085-chr9:96166770..96168958,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000185963
Chromatin interaction
Extended variants information (count: 7 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:7)
rs_ID
r
2
[population]
rs10992723
0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992728
0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2184255
0.90[EUR][1000 genomes]
rs2841680
0.88[ASN][1000 genomes]
rs2841681
0.86[ASN][1000 genomes]
rs4563950
0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7020852
0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links