Variant report
| Variant | rs7020852 |
|---|---|
| Chromosome Location | chr9:96163260-96163261 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:96162175..96163726-chr9:96211698..96214352,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048828 | Chromatin interaction |
| ENSG00000188938 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10761237 | 0.80[ASW][hapmap] |
| rs10992723 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10992728 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2184255 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2841680 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs2841681 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs3901421 | 0.81[YRI][hapmap] |
| rs3933795 | 0.94[ASW][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs4563950 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72743489 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7020852 | ANKRD19 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
