Variant report

Variant	rs3933795
Chromosome Location	chr9:96185673-96185674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96184367..96186699-chr9:96198169..96200807,2	MCF-7	breast:
2	chr9:96184204..96185909-chr9:96212703..96215199,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000227603	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10115234	0.85[CEU][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10512225	0.80[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10761226	0.88[ASN][1000 genomes]
rs10761234	0.89[AMR][1000 genomes]
rs10761237	0.87[ASW][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes]
rs10821126	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821127	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821131	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821135	0.92[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821144	0.85[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821155	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs10821162	0.86[AMR][1000 genomes]
rs10992731	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992788	0.86[AMR][1000 genomes]
rs10992789	0.86[AMR][1000 genomes]
rs11789176	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13292712	0.88[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2184255	0.94[ASW][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs3901421	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237221	0.85[CEU][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4310267	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4563950	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs4607675	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4743927	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744243	0.92[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744245	0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61707921	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62574545	0.81[ASN][1000 genomes]
rs6479484	0.81[ASW][hapmap];1.00[CEU][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479485	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479492	0.85[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6479493	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7019001	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7020852	0.94[ASW][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes]
rs7021689	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7023212	0.81[YRI][hapmap];0.86[AMR][1000 genomes]
rs7023577	0.91[MEX][hapmap];0.80[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes]
rs7035504	0.84[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7040832	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs883782	0.88[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs883784	0.86[AMR][1000 genomes]
rs952288	0.85[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs966789	0.85[CEU][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3933795	ANKRD19	cis	cerebellum	SCAN
rs3933795	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96184600-96186200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:96185200-96185800	Enhancers	Fetal Brain Female	brain
3	chr9:96185200-96186000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:96185200-96186000	Enhancers	Fetal Stomach	stomach
5	chr9:96185400-96186000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:96185400-96186000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:96185600-96185800	Active TSS	Colon Smooth Muscle	Colon
8	chr9:96185600-96185800	Enhancers	Gastric	stomach
9	chr9:96185600-96186000	Enhancers	Pancreas	Pancrea
10	chr9:96185600-96186000	Enhancers	Stomach Smooth Muscle	stomach
11	chr9:96185600-96186400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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