Variant report

Variant	rs62574545
Chromosome Location	chr9:96261960-96261961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96248016..96251380-chr9:96259927..96262755,3	MCF-7	breast:
2	chr9:96212252..96216666-chr9:96261096..96265019,5	K562	blood:
3	chr9:96213983..96216666-chr9:96261096..96263660,2	K562	blood:
4	chr9:96261936..96263563-chr9:96264731..96266679,2	MCF-7	breast:
5	chr9:96261356..96262938-chr9:96267899..96270000,2	MCF-7	breast:
6	chr9:96254779..96257844-chr9:96259033..96262456,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

rs_ID	r²[population]
rs10115234	0.90[ASN][1000 genomes]
rs10512225	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10761226	0.91[ASN][1000 genomes]
rs10761234	0.90[ASN][1000 genomes]
rs10821126	0.82[ASN][1000 genomes]
rs10821127	0.83[ASN][1000 genomes]
rs10821135	0.93[ASN][1000 genomes]
rs10821144	0.97[ASN][1000 genomes]
rs10821155	0.90[ASN][1000 genomes]
rs10992731	0.82[ASN][1000 genomes]
rs13292712	0.90[ASN][1000 genomes]
rs3901421	0.83[ASN][1000 genomes]
rs3933795	0.81[ASN][1000 genomes]
rs4237221	0.89[ASN][1000 genomes]
rs4607675	0.89[ASN][1000 genomes]
rs4743927	0.89[ASN][1000 genomes]
rs4744243	0.92[ASN][1000 genomes]
rs4744245	0.93[ASN][1000 genomes]
rs61707921	0.93[ASN][1000 genomes]
rs6479484	0.91[ASN][1000 genomes]
rs6479485	0.91[ASN][1000 genomes]
rs6479492	0.90[ASN][1000 genomes]
rs6479493	0.87[ASN][1000 genomes]
rs7019001	0.90[ASN][1000 genomes]
rs7035504	0.90[ASN][1000 genomes]
rs7040832	0.82[ASN][1000 genomes]
rs883782	0.90[ASN][1000 genomes]
rs883784	0.88[ASN][1000 genomes]
rs952288	0.97[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs62574545	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
4	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
5	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:96244800-96262000	Strong transcription	Primary T cells from cord blood	blood
8	chr9:96249000-96262400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:96250400-96262600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:96250400-96262600	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr9:96250400-96266000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr9:96250600-96262400	Strong transcription	Fetal Stomach	stomach
13	chr9:96252800-96262600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr9:96253200-96263000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr9:96254400-96262200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:96254600-96262400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr9:96254600-96263000	Strong transcription	Thymus	Thymus
18	chr9:96254600-96263200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:96254800-96262000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:96254800-96262200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:96254800-96262400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:96254800-96263200	Strong transcription	Primary B cells from cord blood	blood
23	chr9:96254800-96263200	Strong transcription	Fetal Muscle Leg	muscle
24	chr9:96254800-96266600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:96255000-96262200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr9:96255000-96262200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:96255200-96262200	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr9:96255200-96266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:96255200-96267200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:96255400-96262200	Weak transcription	Psoas Muscle	Psoas
31	chr9:96255400-96262200	Strong transcription	A549	lung
32	chr9:96255400-96268400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:96255600-96263000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr9:96255800-96262200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr9:96255800-96262400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:96255800-96263200	Strong transcription	GM12878-XiMat	blood
37	chr9:96255800-96266200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:96255800-96266800	Strong transcription	HepG2	liver
39	chr9:96256000-96262200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:96256000-96262600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr9:96256000-96262600	Strong transcription	Placenta	Placenta
42	chr9:96256000-96263000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:96256000-96263200	Strong transcription	K562	blood
44	chr9:96256000-96265000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:96256200-96262200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr9:96256200-96262200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:96256200-96262600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:96256200-96262600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr9:96256400-96262200	Strong transcription	Adipose Nuclei	Adipose
50	chr9:96256400-96262400	Strong transcription	Hela-S3	cervix

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