Variant report

Variant	rs4744245
Chromosome Location	chr9:96242654-96242655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96233835..96235400-chr9:96241392..96243582,2	K562	blood:
2	chr9:96222124..96223633-chr9:96240798..96243259,2	K562	blood:
3	chr9:96220347..96222637-chr9:96242128..96243998,2	MCF-7	breast:
4	chr9:96232297..96234859-chr9:96241804..96243993,2	MCF-7	breast:
5	chr9:96241899..96244084-chr9:96246554..96249492,2	MCF-7	breast:
6	chr9:96211777..96216293-chr9:96240145..96244458,5	MCF-7	breast:
7	chr9:96239024..96243784-chr9:96244555..96247463,4	K562	blood:
8	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10115234	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10761226	0.98[ASN][1000 genomes]
rs10761234	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10761237	0.87[AMR][1000 genomes]
rs10821126	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821127	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821131	0.95[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821155	0.90[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821162	0.88[AMR][1000 genomes]
rs10992731	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992788	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992789	0.88[AMR][1000 genomes]
rs11789176	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13292712	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3901421	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3924389	0.81[ASN][1000 genomes]
rs3933795	0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237221	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4310267	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4607675	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743927	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61707921	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62574545	0.93[ASN][1000 genomes]
rs6479484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479487	0.96[YRI][hapmap]
rs6479492	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479493	0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7019001	0.90[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7021689	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7023212	0.88[AMR][1000 genomes]
rs7023577	0.87[AMR][1000 genomes]
rs7035504	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7040832	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs883782	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs883784	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs952288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs966789	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4744245	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96230000-96244800	Weak transcription	Thymus	Thymus
3	chr9:96231600-96244800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:96231600-96244800	Weak transcription	Aorta	Aorta
5	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
6	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
7	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
8	chr9:96231600-96256400	Weak transcription	NH-A	brain
9	chr9:96231800-96245000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr9:96233400-96242800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr9:96233600-96243000	Weak transcription	Left Ventricle	heart
18	chr9:96233600-96245000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:96233600-96246400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:96233600-96246400	Weak transcription	Gastric	stomach
21	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr9:96233800-96244800	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:96233800-96245000	Weak transcription	Brain Substantia Nigra	brain
24	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
25	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr9:96234400-96243400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
31	chr9:96236000-96243200	Weak transcription	Esophagus	oesophagus
32	chr9:96236000-96246400	Weak transcription	Ovary	ovary
33	chr9:96236400-96243200	Strong transcription	Primary T cells from cord blood	blood
34	chr9:96236800-96243400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:96237200-96243000	Strong transcription	Primary B cells from cord blood	blood
36	chr9:96238200-96242800	Strong transcription	HMEC	breast
37	chr9:96238200-96248600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr9:96238400-96243000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:96238400-96246000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr9:96238400-96246400	Weak transcription	NHLF	lung
41	chr9:96238400-96252800	Strong transcription	Placenta	Placenta
42	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr9:96238800-96246400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:96238800-96246400	Weak transcription	HSMM	muscle
45	chr9:96238800-96256400	Weak transcription	Fetal Kidney	kidney
46	chr9:96239400-96246400	Weak transcription	Brain Anterior Caudate	brain
47	chr9:96239400-96251800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
49	chr9:96240000-96244000	Weak transcription	Fetal Muscle Leg	muscle
50	chr9:96240000-96245800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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