Variant report

Variant	rs11789176
Chromosome Location	chr9:96196166-96196167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96194036..96195679-chr9:96195790..96198245,2	MCF-7	breast:
2	chr9:96194892..96196577-chr9:96200369..96203160,3	K562	blood:
3	chr9:96191335..96193739-chr9:96195516..96197306,2	K562	blood:

Variant related genes	Relation type
ENSG00000237385	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10115234	0.85[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs10512225	0.86[JPT][hapmap]
rs10761234	0.82[AMR][1000 genomes]
rs10821126	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821127	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821131	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821135	0.92[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821144	0.86[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821155	0.85[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs10992731	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13292712	0.89[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs2184255	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs3901421	1.00[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3933795	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237221	0.86[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs4310267	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4607675	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4743927	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744243	0.92[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744245	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61707921	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6479484	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6479485	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6479492	0.86[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479493	0.85[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs7019001	0.85[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs7021689	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7035504	0.85[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs7040832	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs883782	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs883784	0.83[AMR][1000 genomes]
rs952288	0.85[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs966789	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369704	chr9:96196089-96196606	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11789176	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96190600-96196600	Weak transcription	Placenta	Placenta
5	chr9:96193000-96196600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:96194000-96207800	Weak transcription	Thymus	Thymus
7	chr9:96194200-96207600	Weak transcription	Primary T cells from cord blood	blood
8	chr9:96194400-96196600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:96194400-96208000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr9:96194400-96208000	Weak transcription	Fetal Intestine Large	intestine
11	chr9:96194400-96208400	Weak transcription	Fetal Intestine Small	intestine
12	chr9:96194400-96208400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:96194400-96208400	Weak transcription	Small Intestine	intestine
14	chr9:96194400-96208800	Weak transcription	Brain Anterior Caudate	brain
15	chr9:96194400-96209200	Weak transcription	Fetal Kidney	kidney
16	chr9:96194600-96208200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:96195400-96198600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:96195400-96208200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:96195400-96208200	Weak transcription	Left Ventricle	heart
20	chr9:96195600-96196200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:96195600-96207800	Weak transcription	GM12878-XiMat	blood
22	chr9:96195600-96208400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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