Variant report

Variant	rs10821131
Chromosome Location	chr9:96228822-96228823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96228099..96230540-chr9:96327402..96330040,2	K562	blood:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96226992..96229421-chr9:96235816..96238058,2	K562	blood:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10115234	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes]
rs10512225	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs10761226	0.85[ASN][1000 genomes]
rs10761234	0.89[AMR][1000 genomes]
rs10761237	0.83[AMR][1000 genomes]
rs10821126	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821127	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821135	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821144	0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821155	0.85[CEU][hapmap];0.85[CHB][hapmap];0.92[AMR][1000 genomes]
rs10821162	0.84[AMR][1000 genomes]
rs10992731	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992788	0.84[AMR][1000 genomes]
rs10992789	0.84[AMR][1000 genomes]
rs11789176	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13292712	0.89[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes]
rs3901421	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3933795	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4237221	0.86[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes]
rs4607675	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743927	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744243	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744245	0.95[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61707921	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479484	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479485	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479487	0.89[YRI][hapmap]
rs6479492	0.86[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479493	0.85[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes]
rs7019001	0.85[CEU][hapmap];0.85[CHB][hapmap];0.92[AMR][1000 genomes]
rs7021689	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7023212	0.84[AMR][1000 genomes]
rs7023577	0.85[AMR][1000 genomes]
rs7035504	0.85[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes]
rs7040832	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs883782	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes]
rs883784	0.92[AMR][1000 genomes]
rs952288	0.85[CEU][hapmap];0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs966789	0.86[CEU][hapmap];0.84[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10821131	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
5	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
6	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
7	chr9:96217400-96230800	Weak transcription	HSMM	muscle
8	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
9	chr9:96219200-96229000	Weak transcription	NH-A	brain
10	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:96221200-96229000	Weak transcription	Osteobl	bone
13	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood
17	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:96224400-96229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:96224400-96233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:96224800-96232000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr9:96224800-96232000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:96225000-96229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:96225000-96233600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr9:96225400-96229000	Weak transcription	HMEC	breast
26	chr9:96225400-96230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:96225600-96229000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:96225600-96230000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:96225600-96230400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr9:96225600-96231200	Enhancers	Stomach Mucosa	stomach
31	chr9:96225800-96230000	Enhancers	Primary B cells from cord blood	blood
32	chr9:96225800-96230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:96225800-96231200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr9:96225800-96231600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:96225800-96231600	Enhancers	Brain Substantia Nigra	brain
36	chr9:96225800-96231800	Enhancers	Primary B cells from peripheral blood	blood
37	chr9:96226000-96229400	Enhancers	Duodenum Mucosa	Duodenum
38	chr9:96226000-96230000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr9:96226000-96231800	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr9:96226000-96233800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr9:96226000-96233800	Enhancers	Small Intestine	intestine
42	chr9:96226200-96231200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr9:96226400-96231600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr9:96226400-96233400	Enhancers	Colon Smooth Muscle	Colon
45	chr9:96226600-96229000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:96226600-96230000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr9:96226600-96230000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:96226600-96230000	Enhancers	Fetal Heart	heart
49	chr9:96226600-96230600	Enhancers	Fetal Thymus	thymus
50	chr9:96226600-96231200	Enhancers	Fetal Intestine Large	intestine

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