Variant report

Variant	rs7019001
Chromosome Location	chr9:96291224-96291225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:96291200-96291415	ProgFib	skin:	n/a	n/a
2	POLR2A	chr9:96290906-96291271	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96290471..96293694-chr9:96293846..96296779,3	MCF-7	breast:
2	chr9:96289697..96291647-chr9:96299616..96302310,2	K562	blood:
3	chr9:96287109..96291346-chr9:96292892..96295512,4	MCF-7	breast:
4	chr9:96290421..96292489-chr9:96327392..96330270,2	MCF-7	breast:
5	chr9:96212967..96214736-chr9:96291128..96293396,2	MCF-7	breast:
6	chr9:96289339..96291734-chr9:96339194..96341014,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM120A	TF binding region
ENSG00000188938	Chromatin interaction
ENSG00000263875	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10115234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512225	0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10761226	0.85[ASN][1000 genomes]
rs10761234	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761237	0.85[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821126	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821127	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821131	0.85[CEU][hapmap];0.85[CHB][hapmap];0.92[AMR][1000 genomes]
rs10821135	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821144	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821162	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821166	0.81[CEU][hapmap]
rs10992731	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992788	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992789	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11789176	0.85[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs12554020	0.82[YRI][hapmap]
rs13292712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3901421	0.85[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3933795	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4237221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4310267	0.82[AMR][1000 genomes]
rs4552973	0.80[YRI][hapmap]
rs4607675	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743927	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744243	0.93[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744245	0.90[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61707921	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62574545	0.90[ASN][1000 genomes]
rs6479484	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479485	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479493	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7021689	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7023212	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7023577	0.92[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7035504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040832	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs883782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs952288	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs966789	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7019001	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
4	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
6	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
12	chr9:96279000-96297400	Strong transcription	HepG2	liver
13	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
14	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:96281400-96295600	Weak transcription	Psoas Muscle	Psoas
17	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
18	chr9:96283000-96297200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:96283600-96297400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr9:96284400-96297800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:96284800-96292000	Strong transcription	Fetal Intestine Small	intestine
24	chr9:96284800-96297400	Strong transcription	Fetal Stomach	stomach
25	chr9:96284800-96309800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:96285000-96292000	Strong transcription	Fetal Muscle Leg	muscle
28	chr9:96285000-96292200	Strong transcription	Primary T cells from cord blood	blood
29	chr9:96285000-96292200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr9:96285000-96292200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:96285000-96293200	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:96285000-96297200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr9:96285000-96297600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:96285000-96297800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:96285000-96298800	Strong transcription	A549	lung
36	chr9:96285000-96301400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:96285000-96304000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:96285000-96327000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:96285000-96327000	Strong transcription	Dnd41	blood
40	chr9:96285200-96291800	Strong transcription	Primary hematopoietic stem cells	blood
41	chr9:96285200-96296600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:96285200-96299600	Strong transcription	Fetal Intestine Large	intestine
43	chr9:96285200-96299600	Strong transcription	Thymus	Thymus
44	chr9:96285200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:96285400-96292000	Strong transcription	Stomach Smooth Muscle	stomach
46	chr9:96285400-96292400	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr9:96285400-96294200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:96285400-96296400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:96285400-96297800	Strong transcription	Colonic Mucosa	Colon
50	chr9:96285400-96299800	Strong transcription	Primary T cells fromperipheralblood	blood

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