Variant report

Variant	rs10821166
Chromosome Location	chr9:96351923-96351924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96337503..96341816-chr9:96349703..96353663,8	K562	blood:
2	chr9:96350798..96352728-chr9:96354476..96356898,3	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10115234	0.81[CEU][hapmap]
rs10117225	0.85[CHB][hapmap]
rs10123378	0.85[CHB][hapmap]
rs10761238	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs10761239	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761240	0.85[CHB][hapmap]
rs10761243	0.85[CHB][hapmap]
rs10821144	0.82[CEU][hapmap]
rs10821155	0.81[CEU][hapmap]
rs10821164	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821165	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821167	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821168	0.85[CHB][hapmap]
rs10821181	0.85[CHB][hapmap]
rs10992791	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992792	0.85[CHB][hapmap]
rs10992797	0.85[CHB][hapmap]
rs10992804	0.90[CHB][hapmap]
rs13292712	0.85[CEU][hapmap]
rs1412048	0.85[CHB][hapmap]
rs2398845	0.85[CHB][hapmap]
rs3922729	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237221	0.82[CEU][hapmap]
rs4568663	0.85[CHB][hapmap]
rs6479492	0.82[CEU][hapmap]
rs6479493	0.81[CEU][hapmap]
rs6479496	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019001	0.81[CEU][hapmap]
rs7023212	0.82[CEU][hapmap]
rs7023577	0.81[CEU][hapmap]
rs7035504	0.82[CEU][hapmap]
rs7857266	0.90[CHB][hapmap]
rs883782	0.81[CEU][hapmap]
rs952288	0.81[CEU][hapmap]
rs966789	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96341400-96356000	Weak transcription	Hela-S3	cervix
2	chr9:96341600-96359600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:96342200-96359600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:96342600-96357800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:96343400-96360600	Weak transcription	Dnd41	blood
7	chr9:96344800-96356400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:96345000-96355000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:96345000-96356400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:96345000-96362600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:96347400-96352200	Enhancers	Psoas Muscle	Psoas
12	chr9:96347400-96353800	Enhancers	Ovary	ovary
13	chr9:96347400-96355400	Enhancers	Pancreas	Pancrea
14	chr9:96347400-96359000	Enhancers	Left Ventricle	heart
15	chr9:96347600-96352800	Enhancers	Gastric	stomach
16	chr9:96347600-96353000	Enhancers	Lung	lung
17	chr9:96347600-96353600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr9:96347600-96355200	Enhancers	Right Atrium	heart
19	chr9:96347600-96355600	Enhancers	Right Ventricle	heart
20	chr9:96347600-96356200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:96347600-96360600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:96348000-96353800	Enhancers	Fetal Muscle Trunk	muscle
23	chr9:96348200-96354800	Weak transcription	Small Intestine	intestine
24	chr9:96348400-96354400	Enhancers	Brain Hippocampus Middle	brain
25	chr9:96348400-96356200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:96348400-96360200	Weak transcription	Primary B cells from cord blood	blood
27	chr9:96348400-96360200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:96348800-96353400	Enhancers	Spleen	Spleen
29	chr9:96349000-96352000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:96349000-96352000	Weak transcription	Fetal Brain Male	brain
31	chr9:96349000-96352600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr9:96349000-96352800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:96349200-96352600	Weak transcription	Brain Germinal Matrix	brain
35	chr9:96349200-96353000	Weak transcription	Fetal Intestine Small	intestine
36	chr9:96349400-96352200	Enhancers	Stomach Smooth Muscle	stomach
37	chr9:96349400-96356200	Weak transcription	A549	lung
38	chr9:96350000-96352200	Enhancers	Esophagus	oesophagus
39	chr9:96350000-96352600	Enhancers	Stomach Mucosa	stomach
40	chr9:96350000-96353000	Enhancers	Colon Smooth Muscle	Colon
41	chr9:96350000-96355200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr9:96350200-96352400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:96350200-96353000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:96350400-96352800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr9:96350400-96354200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr9:96350400-96354800	Weak transcription	K562	blood
47	chr9:96350600-96352000	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr9:96350600-96352400	Enhancers	Fetal Stomach	stomach
49	chr9:96350600-96352600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:96350800-96352000	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links