Variant report

Variant	rs10761238
Chromosome Location	chr9:96351217-96351218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96337503..96341816-chr9:96349703..96353663,8	K562	blood:
2	chr9:96350798..96352728-chr9:96354476..96356898,3	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10114002	0.85[CEU][hapmap];0.80[CHD][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs10116422	0.85[CEU][hapmap];0.80[CHD][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs10117225	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10117691	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10123378	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10156602	0.89[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10512223	0.88[CEU][hapmap]
rs10739951	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761227	0.80[CEU][hapmap]
rs10761229	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs10761230	0.81[CEU][hapmap]
rs10761231	0.88[CEU][hapmap]
rs10761232	0.87[CEU][hapmap]
rs10761233	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs10761235	0.86[CEU][hapmap]
rs10761239	0.85[CHB][hapmap]
rs10761240	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761241	0.90[ASN][1000 genomes]
rs10761242	0.95[ASN][1000 genomes]
rs10761243	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10821134	0.81[CEU][hapmap]
rs10821136	0.81[CEU][hapmap]
rs10821141	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs10821142	0.88[CEU][hapmap]
rs10821143	0.88[CEU][hapmap]
rs10821145	0.88[CEU][hapmap]
rs10821146	0.83[CEU][hapmap]
rs10821147	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs10821148	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs10821150	0.91[CEU][hapmap]
rs10821151	0.88[CEU][hapmap]
rs10821158	0.88[CEU][hapmap]
rs10821159	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10821160	0.96[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs10821163	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10821164	0.93[ASW][hapmap];0.85[CHB][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10821166	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs10821168	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821169	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821173	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821174	0.96[ASN][1000 genomes]
rs10821175	0.96[ASN][1000 genomes]
rs10821176	0.96[ASN][1000 genomes]
rs10821179	0.95[ASN][1000 genomes]
rs10821180	0.93[ASN][1000 genomes]
rs10821181	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10992746	0.81[CEU][hapmap]
rs10992748	0.81[CEU][hapmap]
rs10992749	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs10992751	0.82[CEU][hapmap]
rs10992756	0.88[CEU][hapmap]
rs10992757	0.88[CEU][hapmap]
rs10992759	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs10992768	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs10992772	0.87[CEU][hapmap]
rs10992779	0.88[CEU][hapmap]
rs10992780	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs10992781	0.87[CEU][hapmap]
rs10992790	0.84[EUR][1000 genomes]
rs10992792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992797	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992798	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992799	0.96[ASN][1000 genomes]
rs10992800	0.82[ASN][1000 genomes]
rs10992804	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10992805	0.81[ASN][1000 genomes]
rs11790449	0.84[CEU][hapmap]
rs11791374	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs11791934	0.85[ASN][1000 genomes]
rs12376738	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs12377707	0.88[CEU][hapmap]
rs13285064	0.88[CEU][hapmap]
rs13294381	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1412048	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1412049	0.96[ASN][1000 genomes]
rs1412050	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs1556416	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs2183760	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs2297376	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs2398845	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2398846	0.95[ASN][1000 genomes]
rs2398847	0.95[ASN][1000 genomes]
rs2895249	0.95[ASN][1000 genomes]
rs3813387	0.88[CEU][hapmap]
rs3813388	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs4307405	0.88[CEU][hapmap]
rs4568663	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4743922	0.81[CEU][hapmap]
rs4743924	0.88[CEU][hapmap]
rs4743928	0.88[CEU][hapmap]
rs4744242	0.81[CEU][hapmap]
rs4744247	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs4744249	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs4744250	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs4744254	0.88[CEU][hapmap]
rs564	0.83[EUR][1000 genomes]
rs7857266	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7869969	0.80[CEU][hapmap]
rs882851	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96340600-96351600	Weak transcription	Thymus	Thymus
2	chr9:96341400-96356000	Weak transcription	Hela-S3	cervix
3	chr9:96341600-96351600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:96341600-96359600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:96342200-96359600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:96342600-96357800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:96343400-96360600	Weak transcription	Dnd41	blood
9	chr9:96344800-96356400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:96345000-96351400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:96345000-96355000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:96345000-96356400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:96345000-96362600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr9:96345400-96351400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:96345600-96351600	Weak transcription	Fetal Intestine Large	intestine
16	chr9:96345600-96351800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:96347400-96352200	Enhancers	Psoas Muscle	Psoas
18	chr9:96347400-96353800	Enhancers	Ovary	ovary
19	chr9:96347400-96355400	Enhancers	Pancreas	Pancrea
20	chr9:96347400-96359000	Enhancers	Left Ventricle	heart
21	chr9:96347600-96351600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:96347600-96352800	Enhancers	Gastric	stomach
23	chr9:96347600-96353000	Enhancers	Lung	lung
24	chr9:96347600-96353600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr9:96347600-96355200	Enhancers	Right Atrium	heart
26	chr9:96347600-96355600	Enhancers	Right Ventricle	heart
27	chr9:96347600-96356200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:96347600-96360600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr9:96347800-96351400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:96348000-96351400	Weak transcription	Primary T cells from cord blood	blood
31	chr9:96348000-96353800	Enhancers	Fetal Muscle Trunk	muscle
32	chr9:96348200-96354800	Weak transcription	Small Intestine	intestine
33	chr9:96348400-96351400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr9:96348400-96354400	Enhancers	Brain Hippocampus Middle	brain
35	chr9:96348400-96356200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:96348400-96360200	Weak transcription	Primary B cells from cord blood	blood
37	chr9:96348400-96360200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr9:96348800-96351400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:96348800-96353400	Enhancers	Spleen	Spleen
40	chr9:96349000-96352000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr9:96349000-96352000	Weak transcription	Fetal Brain Male	brain
42	chr9:96349000-96352600	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr9:96349000-96352800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr9:96349200-96352600	Weak transcription	Brain Germinal Matrix	brain
46	chr9:96349200-96353000	Weak transcription	Fetal Intestine Small	intestine
47	chr9:96349400-96352200	Enhancers	Stomach Smooth Muscle	stomach
48	chr9:96349400-96356200	Weak transcription	A549	lung
49	chr9:96349600-96351400	Weak transcription	Fetal Brain Female	brain
50	chr9:96349800-96351800	Enhancers	Placenta	Placenta

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