Variant report

Variant	rs10821169
Chromosome Location	chr9:96361119-96361120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96356589..96359432-chr9:96360730..96362532,3	MCF-7	breast:
2	chr9:96353399..96355498-chr9:96360574..96362233,2	MCF-7	breast:
3	chr9:96360523..96363170-chr9:96791187..96793107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10117225	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10123378	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10156602	0.80[ASN][1000 genomes]
rs10739951	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761238	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761240	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761241	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761242	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761243	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821168	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821173	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821174	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821175	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821176	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821179	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821180	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821181	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10992792	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992797	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992798	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992799	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992800	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992804	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10992805	0.84[ASN][1000 genomes]
rs11791934	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13291079	0.86[EUR][1000 genomes]
rs13294381	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1412048	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1412049	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2398845	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2398846	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2398847	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2895249	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4568663	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7857266	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:96345000-96362600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:96352400-96366000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:96352400-96369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:96352400-96384600	Weak transcription	NHLF	lung
7	chr9:96352600-96362400	Weak transcription	Fetal Lung	lung
8	chr9:96354200-96361400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:96355000-96361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:96355200-96362600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:96355200-96362800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:96355200-96362800	Weak transcription	Brain Angular Gyrus	brain
13	chr9:96355400-96361200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:96355400-96361400	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:96356400-96364000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr9:96356600-96365600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:96356800-96362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:96357000-96361200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:96357000-96361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:96357000-96361400	Weak transcription	NHDF-Ad	bronchial
21	chr9:96357000-96361600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:96357000-96362200	Weak transcription	Small Intestine	intestine
23	chr9:96357000-96362400	Weak transcription	HSMM	muscle
24	chr9:96357000-96362600	Weak transcription	A549	lung
25	chr9:96357000-96367000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:96357200-96361200	Weak transcription	Stomach Mucosa	stomach
27	chr9:96357200-96361800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:96357200-96361800	Weak transcription	K562	blood
29	chr9:96357200-96362400	Weak transcription	Hela-S3	cervix
30	chr9:96357200-96362800	Weak transcription	HMEC	breast
31	chr9:96357400-96362400	Weak transcription	NHEK	skin
32	chr9:96357600-96364200	Enhancers	Pancreas	Pancrea
33	chr9:96357600-96364600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:96357800-96362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:96358200-96363000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:96358200-96363600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:96358400-96363000	Enhancers	Right Atrium	heart
38	chr9:96358400-96364000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr9:96358400-96365200	Enhancers	Primary B cells from peripheral blood	blood
40	chr9:96359000-96361200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:96359000-96361200	Weak transcription	Esophagus	oesophagus
42	chr9:96359200-96364000	Enhancers	Primary T cells fromperipheralblood	blood
43	chr9:96359400-96362600	Enhancers	Primary T cells from cord blood	blood
44	chr9:96359600-96361600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:96359600-96361600	Enhancers	Spleen	Spleen
46	chr9:96359600-96363000	Enhancers	Ovary	ovary
47	chr9:96359600-96363200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:96359600-96363200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:96359600-96363600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr9:96359600-96363800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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