Variant report

Variant	rs13291079
Chromosome Location	chr9:96360650-96360651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96353399..96355498-chr9:96360574..96362233,2	MCF-7	breast:
2	chr9:96360523..96363170-chr9:96791187..96793107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10117225	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10123378	0.92[CEU][hapmap]
rs10156602	0.81[CEU][hapmap]
rs10739951	0.86[EUR][1000 genomes]
rs10761240	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs10761241	0.82[EUR][1000 genomes]
rs10761242	0.83[EUR][1000 genomes]
rs10761243	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10821168	0.82[CEU][hapmap]
rs10821169	0.86[EUR][1000 genomes]
rs10821173	0.86[EUR][1000 genomes]
rs10821174	0.83[EUR][1000 genomes]
rs10821175	0.83[EUR][1000 genomes]
rs10821176	0.83[EUR][1000 genomes]
rs10821179	0.83[EUR][1000 genomes]
rs10821180	0.83[EUR][1000 genomes]
rs10821181	0.96[CEU][hapmap]
rs10992797	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10992798	0.85[EUR][1000 genomes]
rs10992799	0.82[EUR][1000 genomes]
rs10992804	0.93[CEU][hapmap]
rs1412048	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1412049	0.83[EUR][1000 genomes]
rs2398845	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2398846	0.83[EUR][1000 genomes]
rs2398847	0.83[EUR][1000 genomes]
rs2895249	0.83[EUR][1000 genomes]
rs4568663	0.92[CEU][hapmap]
rs7857266	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:96345000-96362600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:96352400-96361000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:96352400-96366000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:96352400-96369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:96352400-96384600	Weak transcription	NHLF	lung
8	chr9:96352600-96362400	Weak transcription	Fetal Lung	lung
9	chr9:96352800-96360800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:96354200-96361400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:96355000-96361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:96355200-96362600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:96355200-96362800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:96355200-96362800	Weak transcription	Brain Angular Gyrus	brain
15	chr9:96355400-96361200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:96355400-96361400	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:96356400-96364000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr9:96356600-96365600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:96356800-96362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:96357000-96360800	Weak transcription	Adipose Nuclei	Adipose
21	chr9:96357000-96360800	Weak transcription	Colonic Mucosa	Colon
22	chr9:96357000-96361000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:96357000-96361000	Weak transcription	Gastric	stomach
24	chr9:96357000-96361200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:96357000-96361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:96357000-96361400	Weak transcription	NHDF-Ad	bronchial
27	chr9:96357000-96361600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:96357000-96362200	Weak transcription	Small Intestine	intestine
29	chr9:96357000-96362400	Weak transcription	HSMM	muscle
30	chr9:96357000-96362600	Weak transcription	A549	lung
31	chr9:96357000-96367000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:96357200-96360800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:96357200-96360800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr9:96357200-96361200	Weak transcription	Stomach Mucosa	stomach
35	chr9:96357200-96361800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:96357200-96361800	Weak transcription	K562	blood
37	chr9:96357200-96362400	Weak transcription	Hela-S3	cervix
38	chr9:96357200-96362800	Weak transcription	HMEC	breast
39	chr9:96357400-96361000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:96357400-96362400	Weak transcription	NHEK	skin
41	chr9:96357600-96364200	Enhancers	Pancreas	Pancrea
42	chr9:96357600-96364600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr9:96357800-96362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:96358200-96363000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:96358200-96363600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:96358400-96363000	Enhancers	Right Atrium	heart
47	chr9:96358400-96364000	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr9:96358400-96365200	Enhancers	Primary B cells from peripheral blood	blood
49	chr9:96358800-96360800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr9:96359000-96361000	Weak transcription	H9 Cell Line	embryonic stem cell

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